Wall clock time and date at job start Mon Mar 30 2020 02:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31479 * 1 3 3 Si 1.86797 * 120.00423 * 2 1 4 4 H 1.48501 * 109.47165 * 269.99849 * 3 2 1 5 5 H 1.48507 * 109.47033 * 29.99882 * 3 2 1 6 6 H 1.48497 * 109.47343 * 149.99868 * 3 2 1 7 7 C 1.38880 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00433 * 186.94580 * 7 2 1 9 9 N 1.37198 * 119.99947 * 6.95569 * 7 2 1 10 10 C 1.47049 * 125.40856 * 354.21592 * 9 7 2 11 11 C 1.54109 * 103.86301 * 180.02562 * 10 9 7 12 12 H 1.08993 * 110.54812 * 241.26828 * 11 10 9 13 13 C 1.50697 * 110.54615 * 118.59586 * 11 10 9 14 14 O 1.20825 * 119.99878 * 259.99853 * 13 11 10 15 15 O 1.34224 * 119.99819 * 79.73280 * 13 11 10 16 16 N 1.47053 * 103.85953 * 0.02562 * 11 10 9 17 17 C 1.33947 * 109.18198 * 0.02562 * 16 11 10 18 18 O 1.21586 * 123.04462 * 180.02562 * 17 16 11 19 19 H 0.97002 * 119.99133 * 359.97438 * 1 2 3 20 20 H 1.09003 * 110.54593 * 61.41233 * 10 9 7 21 21 H 1.08991 * 110.55577 * 298.60174 * 10 9 7 22 22 H 0.96705 * 116.99953 * 179.97438 * 15 13 11 23 23 H 0.97003 * 125.40992 * 179.97438 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2489 1.6176 0.0000 4 1 2.4965 2.0463 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5464 1.4400 0.7000 7 6 2.0091 -1.2028 0.0005 8 1 3.0831 -1.2063 0.1136 9 7 1.3306 -2.3866 -0.1428 10 6 -0.1322 -2.5306 -0.1844 11 6 -0.3493 -4.0466 -0.3559 12 1 -0.8732 -4.2550 -1.2887 13 6 -1.1140 -4.6073 0.8154 14 8 -0.5263 -5.1802 1.7020 15 8 -2.4473 -4.4654 0.8762 16 7 1.0143 -4.5959 -0.3921 17 6 1.8954 -3.5950 -0.2650 18 8 3.0990 -3.7675 -0.2628 19 1 -0.4849 0.8401 0.0004 20 1 -0.5462 -1.9860 -1.0331 21 1 -0.5776 -2.1837 0.7479 22 1 -2.8942 -4.8421 1.6467 23 1 1.2399 -5.5341 -0.4914 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306840922.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:08 Heat of formation + Delta-G solvation = -121.409450 kcal Electronic energy + Delta-G solvation = -13013.441075 eV Core-core repulsion = 10440.590298 eV Total energy + Delta-G solvation = -2572.850778 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.063 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.25538 -40.66563 -37.26520 -37.03337 -35.77697 -33.02349 -30.45920 -27.56490 -25.13312 -22.43233 -22.08852 -19.50334 -19.16286 -18.11045 -17.79529 -17.40760 -16.50599 -16.16559 -15.78671 -15.17348 -14.82579 -14.31350 -13.74172 -13.55273 -13.07332 -12.79387 -12.56419 -12.37583 -12.09975 -11.86750 -11.12823 -11.05082 -10.33017 -9.80657 -8.36243 -5.90959 1.05529 1.43951 1.46141 1.57223 1.74037 2.12473 2.34470 2.49237 3.17049 3.49374 3.52318 4.06005 4.24208 4.65017 4.97263 5.25619 5.41573 5.54795 6.11011 6.24159 6.59290 6.96719 7.16241 7.35083 8.08543 8.73518 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.043561 B = 0.012524 C = 0.010329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.616147 B = 2235.135756 C = 2710.284699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.004 4.004 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.323 4.323 8 H 0.081 0.919 9 N -0.485 5.485 10 C 0.152 3.848 11 C 0.127 3.873 12 H 0.165 0.835 13 C 0.483 3.517 14 O -0.544 6.544 15 O -0.496 6.496 16 N -0.718 5.718 17 C 0.640 3.360 18 O -0.664 6.664 19 H 0.277 0.723 20 H 0.101 0.899 21 H 0.066 0.934 22 H 0.430 0.570 23 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.917 -4.060 -1.468 9.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.204 4.204 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.201 1.201 7 C -0.450 4.450 8 H 0.099 0.901 9 N -0.209 5.209 10 C 0.029 3.971 11 C 0.019 3.981 12 H 0.182 0.818 13 C 0.324 3.676 14 O -0.433 6.433 15 O -0.309 6.309 16 N -0.382 5.382 17 C 0.342 3.658 18 O -0.551 6.551 19 H 0.087 0.913 20 H 0.119 0.881 21 H 0.085 0.915 22 H 0.292 0.708 23 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -8.105 -3.786 -1.528 9.075 hybrid contribution 0.205 -0.034 0.748 0.777 sum -7.900 -3.820 -0.779 8.810 Atomic orbital electron populations 1.69892 1.06256 1.28792 1.49782 1.25971 0.96882 1.01755 0.95821 0.84825 0.77672 0.76474 0.78689 1.19421 1.19507 1.20096 1.19456 0.92373 0.82016 1.51111 0.90132 1.42973 1.06105 1.04354 1.67478 1.22001 0.82112 0.88712 1.04322 1.21867 0.84241 0.94604 0.97408 0.81812 1.23784 0.81467 0.75220 0.87085 1.90715 1.70802 1.41671 1.40161 1.84487 1.20060 1.74728 1.51595 1.44574 1.04164 1.09032 1.80379 1.16113 0.84931 0.82438 0.82361 1.90721 1.14545 1.85341 1.64465 0.91309 0.88129 0.91527 0.70822 0.72462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.94 10.40 21.65 0.23 -45.71 14 2 C 0.00 -0.21 5.48 84.90 0.47 0.26 14 3 Si 1.00 41.72 29.56 68.60 2.03 43.75 14 4 H -0.27 -10.84 7.11 99.48 0.71 -10.14 14 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 14 6 H -0.28 -11.71 7.11 99.48 0.71 -11.00 14 7 C -0.32 -18.42 9.92 84.01 0.83 -17.59 14 8 H 0.08 4.87 7.68 -2.91 -0.02 4.85 14 9 N -0.48 -25.80 3.07 -651.05 -2.00 -27.80 14 10 C 0.15 6.54 5.29 86.65 0.46 7.00 14 11 C 0.13 4.20 4.29 44.51 0.19 4.39 14 12 H 0.16 3.83 8.14 -2.39 -0.02 3.81 14 13 C 0.48 14.99 7.45 71.24 0.53 15.52 14 14 O -0.54 -20.84 17.31 21.97 0.38 -20.46 14 15 O -0.50 -10.94 13.42 -51.36 -0.69 -11.63 14 16 N -0.72 -28.26 5.60 -460.35 -2.58 -30.83 14 17 C 0.64 33.52 8.55 179.57 1.54 35.05 14 18 O -0.66 -40.10 17.53 -3.99 -0.07 -40.17 14 19 H 0.28 13.07 8.31 -92.71 -0.77 12.30 14 20 H 0.10 4.29 7.38 -2.39 -0.02 4.27 14 21 H 0.07 3.06 7.22 -2.39 -0.02 3.04 14 22 H 0.43 5.44 9.10 -74.05 -0.67 4.76 14 23 H 0.43 14.63 8.96 -92.71 -0.83 13.80 14 Total: -1.00 -73.53 215.98 1.08 -72.45 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -0.23 Total: 15.77 kcal Atomic # 6 Polarization: 40.63 SS G_CDS: 4.01 Total: 44.64 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -4.35 Total: -104.35 kcal Atomic # 8 Polarization: -71.89 SS G_CDS: -0.38 Total: -72.27 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -73.53 1.08 -72.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306840922.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.957 kcal (2) G-P(sol) polarization free energy of solvation -73.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds