Wall clock time and date at job start Mon Mar 30 2020 02:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47428 * 125.65112 * 359.69708 * 9 7 2 11 11 C 1.55126 * 104.71936 * 155.81651 * 10 9 7 12 12 C 1.55158 * 101.49111 * 37.29433 * 11 10 9 13 13 O 1.42899 * 110.71573 * 82.69287 * 12 11 10 14 14 C 1.50697 * 110.87262 * 205.89609 * 12 11 10 15 15 N 1.34775 * 119.99786 * 200.06027 * 14 12 11 16 16 O 1.21274 * 119.99994 * 20.06748 * 14 12 11 17 17 C 1.47022 * 125.64386 * 180.02562 * 9 7 2 18 18 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 19 19 H 1.09002 * 110.36522 * 274.74436 * 10 9 7 20 20 H 1.08996 * 110.36589 * 37.06639 * 10 9 7 21 21 H 1.09007 * 111.19120 * 279.18832 * 11 10 9 22 22 H 1.09000 * 110.93478 * 155.29115 * 11 10 9 23 23 H 0.96702 * 113.99413 * 185.02596 * 13 12 11 24 24 H 0.97006 * 120.00216 * 0.02562 * 15 14 12 25 25 H 0.96997 * 120.00213 * 180.02562 * 15 14 12 26 26 H 1.08997 * 109.88563 * 300.44314 * 17 9 7 27 27 H 1.09004 * 109.88363 * 61.45443 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1416 -2.5331 0.0064 11 6 -0.4047 -3.9308 -0.6131 12 6 0.7781 -4.7524 -0.0357 13 8 0.4795 -5.2085 1.2853 14 6 1.1151 -5.9135 -0.9352 15 7 1.8085 -6.9626 -0.4502 16 8 0.7624 -5.9040 -2.0955 17 6 1.9316 -3.7275 -0.0112 18 1 -0.4850 0.8400 0.0040 19 1 -0.5184 -2.4915 1.0283 20 1 -0.6048 -1.7560 -0.6015 21 1 -0.3602 -3.8941 -1.7016 22 1 -1.3605 -4.3324 -0.2765 23 1 1.2148 -5.6612 1.7206 24 1 2.0903 -6.9703 0.4780 25 1 2.0257 -7.7098 -1.0292 26 1 2.5542 -3.8491 -0.8976 27 1 2.5342 -3.8652 0.8866 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307406097.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:46 Heat of formation + Delta-G solvation = -87.678634 kcal Electronic energy + Delta-G solvation = -13310.148530 eV Core-core repulsion = 10874.593525 eV Total energy + Delta-G solvation = -2435.555005 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.36391 -38.81484 -36.83579 -34.57643 -33.93378 -31.17878 -29.35994 -26.80451 -23.74080 -22.29461 -21.06065 -19.61272 -18.97908 -17.96384 -16.83319 -16.74329 -15.85363 -15.77007 -15.46422 -14.86817 -14.53804 -14.15420 -13.61480 -13.06131 -12.83333 -12.70672 -12.22899 -12.07416 -12.03111 -11.76501 -11.66349 -10.78641 -10.76089 -10.61728 -8.95473 -7.78964 -5.25790 1.38394 1.48290 1.50923 1.59412 2.33469 2.51198 3.09609 3.32447 3.46564 3.59998 3.93963 4.03778 4.54083 4.62384 4.75617 4.87410 4.97078 5.43957 5.57319 5.73866 5.82469 6.22860 6.26238 6.72525 7.06008 7.20279 7.71914 8.35710 9.23328 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.063584 B = 0.009687 C = 0.009437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.254659 B = 2889.799518 C = 2966.401855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.987 3.013 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.246 4.246 8 H 0.087 0.913 9 N -0.622 5.622 10 C 0.161 3.839 11 C -0.114 4.114 12 C 0.115 3.885 13 O -0.539 6.539 14 C 0.514 3.486 15 N -0.822 5.822 16 O -0.576 6.576 17 C 0.121 3.879 18 H 0.249 0.751 19 H -0.003 1.003 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.393 0.607 24 H 0.418 0.582 25 H 0.414 0.586 26 H 0.030 0.970 27 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 -12.480 2.668 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.814 3.186 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.374 4.374 8 H 0.104 0.896 9 N -0.348 5.348 10 C 0.036 3.964 11 C -0.152 4.152 12 C 0.070 3.930 13 O -0.348 6.348 14 C 0.298 3.702 15 N -0.388 5.388 16 O -0.455 6.455 17 C -0.005 4.005 18 H 0.059 0.941 19 H 0.015 0.985 20 H 0.095 0.905 21 H 0.095 0.905 22 H 0.103 0.897 23 H 0.244 0.756 24 H 0.250 0.750 25 H 0.246 0.754 26 H 0.048 0.952 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.689 -11.850 1.864 12.550 hybrid contribution 0.952 0.412 0.334 1.090 sum 4.640 -11.438 2.198 12.537 Atomic orbital electron populations 1.70043 1.06423 1.25290 1.58129 1.25726 0.96677 1.01285 1.02245 0.84960 0.77603 0.78520 0.77489 1.21264 1.21927 1.19110 1.19506 0.91217 0.83416 1.43280 0.89555 1.44677 1.02545 1.00600 1.87017 1.21742 0.84295 0.93605 0.96781 1.22876 0.96658 0.95549 1.00159 1.22140 0.97321 0.90641 0.82884 1.86670 1.43063 1.78408 1.26614 1.20929 0.77041 0.84470 0.87802 1.43523 1.57046 1.21045 1.17205 1.90713 1.54828 1.80390 1.19533 1.21972 0.93688 0.85319 0.99496 0.94132 0.98538 0.90470 0.90461 0.89650 0.75616 0.75033 0.75362 0.95238 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.62 10.08 21.65 0.22 -57.41 15 2 C -0.07 -3.83 5.49 84.86 0.47 -3.36 15 3 Si 0.99 45.76 29.55 68.60 2.03 47.79 15 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 15 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 15 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 15 7 C -0.25 -13.92 10.27 84.03 0.86 -13.06 15 8 H 0.09 4.60 7.83 -2.91 -0.02 4.58 15 9 N -0.62 -32.87 3.39 -691.54 -2.35 -35.22 15 10 C 0.16 8.41 5.90 86.93 0.51 8.92 15 11 C -0.11 -4.85 6.10 32.06 0.20 -4.65 15 12 C 0.12 4.05 1.19 -10.35 -0.01 4.04 15 13 O -0.54 -15.87 12.99 -148.98 -1.94 -17.80 15 14 C 0.51 15.99 6.98 87.66 0.61 16.61 15 15 N -0.82 -14.72 8.80 -173.54 -1.53 -16.24 15 16 O -0.58 -22.92 16.60 -3.01 -0.05 -22.97 15 17 C 0.12 4.94 6.58 86.73 0.57 5.51 15 18 H 0.25 14.60 8.31 -92.71 -0.77 13.82 15 19 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 15 20 H 0.08 4.57 5.85 -2.39 -0.01 4.55 15 21 H 0.08 3.48 7.23 -2.38 -0.02 3.47 15 22 H 0.08 3.33 8.14 -2.39 -0.02 3.32 15 23 H 0.39 6.73 7.80 -74.06 -0.58 6.15 15 24 H 0.42 4.32 7.52 -92.70 -0.70 3.63 15 25 H 0.41 5.94 8.93 -92.71 -0.83 5.11 15 26 H 0.03 1.23 7.81 -2.39 -0.02 1.21 15 27 H 0.06 2.02 8.06 -2.39 -0.02 2.00 15 Total: -1.00 -75.06 230.88 -1.29 -76.35 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -0.88 Total: 11.49 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 3.21 Total: 14.01 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -3.66 Total: -108.87 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -1.99 Total: -40.77 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -75.06 -1.29 -76.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307406097.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.332 kcal (2) G-P(sol) polarization free energy of solvation -75.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds