Wall clock time and date at job start Mon Mar 30 2020 02:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99646 * 2 1 4 4 H 1.48501 * 109.46952 * 274.13360 * 3 2 1 5 5 H 1.48489 * 109.47405 * 34.13627 * 3 2 1 6 6 H 1.48501 * 109.46750 * 154.13920 * 3 2 1 7 7 C 1.38803 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00086 * 170.44508 * 7 2 1 9 9 N 1.36942 * 120.00033 * 350.44560 * 7 2 1 10 10 C 1.47420 * 125.64733 * 349.94485 * 9 7 2 11 11 C 1.54905 * 104.83257 * 204.08469 * 10 9 7 12 12 H 1.09002 * 111.03975 * 204.90700 * 11 10 9 13 13 O 1.42892 * 111.00700 * 81.06355 * 11 10 9 14 14 C 1.55166 * 101.58034 * 322.98784 * 11 10 9 15 15 C 1.47025 * 125.64697 * 169.88955 * 9 7 2 16 16 H 1.09002 * 109.87872 * 59.57411 * 15 9 7 17 17 C 1.50693 * 109.88355 * 298.40552 * 15 9 7 18 18 N 1.34780 * 119.99997 * 162.19247 * 17 15 9 19 19 O 1.21283 * 120.00212 * 342.18862 * 17 15 9 20 20 H 0.97009 * 119.99832 * 0.02562 * 1 2 3 21 21 H 1.09008 * 110.36614 * 85.24115 * 10 9 7 22 22 H 1.08996 * 110.36857 * 322.92356 * 10 9 7 23 23 H 0.96698 * 114.00181 * 67.80710 * 13 11 10 24 24 H 1.08999 * 110.71688 * 153.86752 * 14 11 10 25 25 H 1.08995 * 110.71883 * 276.96034 * 14 11 10 26 26 H 0.96998 * 119.99969 * 359.97438 * 18 17 15 27 27 H 0.96998 * 120.00165 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4102 2.0970 -1.3965 5 1 1.4941 2.6259 0.7856 6 1 3.5887 1.4166 0.6107 7 6 2.0103 -1.2021 0.0005 8 1 3.0790 -1.2086 -0.1547 9 7 1.3398 -2.3797 0.1979 10 6 -0.0652 -2.5072 0.6256 11 6 -0.1541 -3.9070 1.2832 12 1 -1.1722 -4.2943 1.2430 13 8 0.3250 -3.8721 2.6289 14 6 0.7929 -4.7375 0.3770 15 6 1.9018 -3.7263 0.0172 16 1 2.7570 -3.8629 0.6791 17 6 2.3240 -3.9173 -1.4167 18 7 3.1768 -4.9091 -1.7417 19 8 1.8964 -3.1786 -2.2783 20 1 -0.4850 0.8401 -0.0004 21 1 -0.7307 -2.4497 -0.2358 22 1 -0.3131 -1.7314 1.3499 23 1 -0.2344 -3.3643 3.2326 24 1 1.2062 -5.5843 0.9249 25 1 0.2711 -5.0765 -0.5178 26 1 3.5190 -5.4997 -1.0525 27 1 3.4483 -5.0323 -2.6647 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307420906.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:42 Heat of formation + Delta-G solvation = -58.164805 kcal Electronic energy + Delta-G solvation = -13462.060283 eV Core-core repulsion = 11027.785094 eV Total energy + Delta-G solvation = -2434.275189 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.08277 -37.17080 -34.51685 -32.96616 -32.04176 -28.97089 -27.76252 -24.56508 -21.80342 -20.31491 -19.18792 -17.37821 -16.79092 -16.19451 -15.73399 -14.71912 -14.05977 -13.88046 -13.66070 -12.82592 -12.55208 -12.21877 -11.58781 -11.56310 -10.91391 -10.77437 -10.57532 -10.16824 -9.98412 -9.83767 -9.15948 -9.00983 -8.97212 -8.52361 -6.79056 -5.69363 -3.00620 3.45106 3.50248 3.51721 3.54103 4.23057 4.55420 4.77101 5.33289 5.40779 5.51831 5.70659 5.78673 6.00317 6.08381 6.29729 6.38633 6.67449 7.36263 7.40047 7.48243 7.77886 8.00794 8.22349 8.32454 9.13048 9.21380 9.83262 10.46880 11.44178 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.030993 B = 0.015461 C = 0.011579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.218831 B = 1810.526742 C = 2417.535838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.215 4.215 8 H 0.074 0.926 9 N -0.563 5.563 10 C 0.147 3.853 11 C 0.070 3.930 12 H 0.058 0.942 13 O -0.561 6.561 14 C -0.108 4.108 15 C 0.146 3.854 16 H 0.059 0.941 17 C 0.486 3.514 18 N -0.873 5.873 19 O -0.518 6.518 20 H 0.252 0.748 21 H 0.036 0.964 22 H 0.078 0.922 23 H 0.374 0.626 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.392 0.608 27 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 -10.121 2.680 10.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.344 4.344 8 H 0.091 0.909 9 N -0.286 5.286 10 C 0.022 3.978 11 C 0.010 3.990 12 H 0.076 0.924 13 O -0.367 6.367 14 C -0.147 4.147 15 C 0.034 3.966 16 H 0.077 0.923 17 C 0.269 3.731 18 N -0.439 5.439 19 O -0.390 6.390 20 H 0.062 0.938 21 H 0.054 0.946 22 H 0.096 0.904 23 H 0.221 0.779 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.219 0.781 27 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.722 -9.604 1.998 9.959 hybrid contribution 0.351 0.847 -0.154 0.930 sum 2.072 -8.756 1.844 9.185 Atomic orbital electron populations 1.69943 1.04964 1.25097 1.56569 1.24788 0.95650 0.97814 1.01876 0.86087 0.78688 0.83393 0.77495 1.21635 1.21622 1.20609 1.18922 0.90865 0.82360 1.42233 0.90863 1.44306 1.09262 0.98605 1.76381 1.22140 0.86180 0.91897 0.97583 1.23281 0.94879 0.98565 0.82240 0.92450 1.86386 1.54974 1.76100 1.19214 1.22452 0.96702 0.97036 0.98467 1.21054 0.96470 0.88870 0.90228 0.92343 1.22747 0.77545 0.78949 0.93879 1.44279 1.51495 1.35910 1.12207 1.90712 1.54015 1.43412 1.50884 0.93787 0.94582 0.90416 0.77949 0.90557 0.90469 0.78067 0.78604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.76 10.68 55.49 0.59 -27.17 15 2 C 0.00 -0.15 5.40 -17.43 -0.09 -0.24 15 3 Si 0.91 23.10 29.56 -169.99 -5.03 18.08 15 4 H -0.29 -7.42 7.11 56.52 0.40 -7.02 15 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 15 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 15 7 C -0.22 -6.30 9.51 -15.06 -0.14 -6.45 15 8 H 0.07 2.12 7.85 -52.49 -0.41 1.71 15 9 N -0.56 -14.85 2.81 -163.89 -0.46 -15.31 15 10 C 0.15 3.59 5.15 -2.53 -0.01 3.58 15 11 C 0.07 1.31 4.43 -24.58 -0.11 1.20 15 12 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 13 O -0.56 -10.08 13.47 -35.23 -0.47 -10.55 15 14 C -0.11 -1.90 6.20 -24.89 -0.15 -2.06 15 15 C 0.15 3.12 3.52 -68.11 -0.24 2.88 15 16 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 17 C 0.49 10.30 7.01 -10.99 -0.08 10.22 15 18 N -0.87 -12.88 8.87 31.22 0.28 -12.61 15 19 O -0.52 -13.88 16.98 5.55 0.09 -13.78 15 20 H 0.25 7.36 8.31 -40.82 -0.34 7.02 15 21 H 0.04 0.97 8.07 -51.92 -0.42 0.56 15 22 H 0.08 2.04 6.94 -51.93 -0.36 1.68 15 23 H 0.37 5.31 9.12 45.56 0.42 5.72 15 24 H 0.08 1.13 8.14 -51.93 -0.42 0.70 15 25 H 0.08 1.30 7.85 -51.93 -0.41 0.90 15 26 H 0.39 4.37 8.83 -40.82 -0.36 4.01 15 27 H 0.38 5.11 8.93 -40.82 -0.36 4.75 15 LS Contribution 235.26 15.07 3.55 3.55 Total: -1.00 -36.08 235.26 -4.59 -40.68 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -2.31 Total: 7.99 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -0.83 Total: 9.13 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.41 Total: -55.08 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.38 Total: -24.34 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.03 Total: 18.08 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -36.08 -4.59 -40.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307420906.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.489 kcal (2) G-P(sol) polarization free energy of solvation -36.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds