Wall clock time and date at job start Mon Mar 30 2020 02:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48497 * 109.47322 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47056 * 119.99730 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99759 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.07992 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99958 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99768 * 179.97438 * 10 9 7 13 13 H 1.09000 * 115.55065 * 34.41723 * 12 10 9 14 14 C 1.52994 * 117.49754 * 248.74340 * 12 10 9 15 15 C 1.53005 * 117.49604 * 180.08207 * 12 10 9 16 16 H 1.08997 * 117.49639 * 359.97438 * 15 12 10 17 17 N 1.46496 * 117.50008 * 214.97986 * 15 12 10 18 18 O 1.21794 * 120.00079 * 120.00186 * 17 15 12 19 19 O 1.21808 * 120.00012 * 300.00389 * 17 15 12 20 20 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 21 21 H 0.97000 * 119.99715 * 359.97438 * 9 7 2 22 22 H 1.09002 * 117.50530 * 0.02562 * 14 12 10 23 23 H 1.09004 * 117.49838 * 145.02537 * 14 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1018 1.6965 1.2126 6 1 3.1019 1.6965 -1.2125 7 6 2.0090 -1.2033 -0.0057 8 1 3.0889 -1.2032 -0.0061 9 7 1.3234 -2.3906 -0.0118 10 6 1.9973 -3.5578 -0.0178 11 8 3.2103 -3.5577 -0.0183 12 6 1.2438 -4.8629 -0.0240 13 1 0.3060 -4.8616 -0.5794 14 6 1.3172 -5.7268 1.2365 15 6 2.0660 -6.1532 -0.0287 16 1 3.1518 -6.0581 -0.0278 17 7 1.5322 -7.2927 -0.7789 18 8 2.1721 -7.7697 -1.6989 19 8 0.4483 -7.7630 -0.4827 20 1 -0.4850 0.8401 0.0040 21 1 0.3534 -2.3906 -0.0118 22 1 1.9101 -5.3512 2.0705 23 1 0.4277 -6.2944 1.5102 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307467209.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:25 Heat of formation + Delta-G solvation = -44.444748 kcal Electronic energy + Delta-G solvation = -12330.021286 eV Core-core repulsion = 9760.507948 eV Total energy + Delta-G solvation = -2569.513338 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.063 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.40160 -40.67529 -37.94967 -37.33578 -36.04783 -33.42675 -29.15571 -27.49280 -24.84135 -23.28713 -21.23904 -20.19057 -20.04597 -19.45803 -18.43286 -17.81521 -16.82447 -15.99963 -15.79019 -15.27558 -14.40971 -13.68599 -13.55580 -13.00851 -12.74516 -12.57524 -12.54695 -12.35854 -12.26201 -12.13653 -12.01237 -11.62516 -10.69458 -10.18799 -8.59004 -6.09562 -0.67703 0.47916 1.27397 1.40935 1.51335 1.61282 2.16995 2.25822 2.65877 2.93039 3.07454 3.30838 3.63249 4.10058 4.17970 4.50270 4.63865 5.20076 5.31084 5.82660 6.38515 6.47899 6.95351 7.33384 7.85571 8.57093 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.078711 B = 0.007333 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.647903 B = 3817.369690 C = 3944.517156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.005 4.005 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.343 4.343 8 H 0.086 0.914 9 N -0.547 5.547 10 C 0.456 3.544 11 O -0.629 6.629 12 C -0.129 4.129 13 H 0.151 0.849 14 C -0.078 4.078 15 C -0.074 4.074 16 H 0.175 0.825 17 N 0.020 4.980 18 O -0.206 6.206 19 O -0.142 6.142 20 H 0.283 0.717 21 H 0.401 0.599 22 H 0.142 0.858 23 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 -6.643 3.010 7.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.207 4.207 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.472 4.472 8 H 0.104 0.896 9 N -0.181 5.181 10 C 0.243 3.757 11 O -0.518 6.518 12 C -0.152 4.152 13 H 0.169 0.831 14 C -0.116 4.116 15 C -0.174 4.174 16 H 0.192 0.808 17 N 0.539 4.461 18 O -0.414 6.414 19 O -0.368 6.368 20 H 0.092 0.908 21 H 0.236 0.764 22 H 0.160 0.840 23 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.657 -5.871 3.332 6.782 hybrid contribution -0.082 0.560 -0.474 0.738 sum -0.739 -5.311 2.858 6.076 Atomic orbital electron populations 1.69654 1.06951 1.30017 1.48281 1.26127 0.96552 1.02654 0.95326 0.84938 0.77819 0.76172 0.79163 1.19327 1.19267 1.19700 1.19724 0.93020 0.83492 1.50996 0.89648 1.41788 1.09676 1.04344 1.62272 1.19257 0.87261 0.84651 0.84548 1.90539 1.15250 1.87556 1.58478 1.22595 0.99765 0.87151 1.05668 0.83148 1.23885 1.02618 0.95912 0.89198 1.25052 1.01747 0.86893 1.03696 0.80805 1.44007 1.00041 1.02075 1.00018 1.94567 1.59766 1.64559 1.22480 1.94471 1.08179 1.63222 1.70972 0.90773 0.76431 0.84048 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.33 13.05 21.66 0.28 -46.05 14 2 C 0.00 -0.24 5.50 84.93 0.47 0.23 14 3 Si 1.00 40.35 29.55 68.60 2.03 42.38 14 4 H -0.27 -10.26 7.11 99.48 0.71 -9.55 14 5 H -0.27 -10.64 7.11 99.48 0.71 -9.94 14 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 14 7 C -0.34 -18.36 9.68 84.04 0.81 -17.55 14 8 H 0.09 4.85 7.16 -2.91 -0.02 4.83 14 9 N -0.55 -26.25 5.29 -306.99 -1.62 -27.87 14 10 C 0.46 20.11 7.57 87.66 0.66 20.77 14 11 O -0.63 -32.50 15.83 -3.07 -0.05 -32.55 14 12 C -0.13 -4.06 6.08 -11.54 -0.07 -4.13 14 13 H 0.15 4.20 8.14 -2.39 -0.02 4.18 14 14 C -0.08 -1.80 9.72 30.62 0.30 -1.51 14 15 C -0.07 -2.18 6.43 45.02 0.29 -1.89 14 16 H 0.17 5.47 7.67 -2.39 -0.02 5.45 14 17 N 0.02 0.62 4.33 -169.28 -0.73 -0.12 14 18 O -0.21 -7.19 19.24 18.89 0.36 -6.83 14 19 O -0.14 -4.18 18.28 18.88 0.35 -3.84 14 20 H 0.28 13.47 8.31 -92.70 -0.77 12.70 14 21 H 0.40 18.16 7.90 -92.71 -0.73 17.43 14 22 H 0.14 3.04 8.14 -2.39 -0.02 3.02 14 23 H 0.16 2.77 7.63 -2.38 -0.02 2.75 14 Total: -1.00 -61.98 226.82 3.60 -58.38 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.52 Total: 20.58 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 2.46 Total: -4.08 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -2.07 Total: -74.04 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: 0.66 Total: -43.21 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -61.98 3.60 -58.38 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307467209.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.937 kcal (2) G-P(sol) polarization free energy of solvation -61.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds