Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99889 * 2 1 4 4 H 1.48506 * 109.46753 * 239.72296 * 3 2 1 5 5 H 1.48497 * 109.47201 * 359.71900 * 3 2 1 6 6 H 1.48499 * 109.47346 * 119.72196 * 3 2 1 7 7 C 1.38955 * 119.99820 * 179.71718 * 2 1 3 8 8 H 1.08000 * 119.99307 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99974 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99808 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00325 * 179.97438 * 10 9 7 13 13 H 1.08997 * 115.54767 * 34.32758 * 12 10 9 14 14 C 1.53006 * 117.50037 * 248.62641 * 12 10 9 15 15 C 1.53001 * 117.50229 * 180.02562 * 12 10 9 16 16 H 1.08996 * 117.49946 * 215.00249 * 15 12 10 17 17 N 1.46501 * 117.49779 * 359.97438 * 15 12 10 18 18 O 1.21799 * 119.99748 * 60.00219 * 17 15 12 19 19 O 1.21794 * 119.99922 * 240.00275 * 17 15 12 20 20 H 0.97000 * 120.00377 * 0.27775 * 1 2 3 21 21 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 22 22 H 1.09000 * 117.49678 * 359.97438 * 14 12 10 23 23 H 1.08998 * 117.49965 * 145.02046 * 14 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1069 1.6934 -1.2092 5 1 1.2831 2.7464 -0.0069 6 1 3.0967 1.6994 1.2159 7 6 2.0089 -1.2034 0.0059 8 1 3.0889 -1.2033 0.0064 9 7 1.3234 -2.3906 0.0113 10 6 1.9973 -3.5578 0.0165 11 8 3.2102 -3.5578 0.0170 12 6 1.2438 -4.8629 0.0230 13 1 0.3053 -4.8666 -0.5312 14 6 1.3195 -5.7161 1.2908 15 6 2.0659 -6.1533 0.0293 16 1 1.6684 -7.0060 -0.5211 17 7 3.5254 -6.0255 0.0281 18 8 4.0863 -5.4423 0.9384 19 8 4.1776 -6.5025 -0.8832 20 1 -0.4851 0.8400 -0.0041 21 1 0.3533 -2.3906 0.0113 22 1 1.9145 -5.3336 2.1200 23 1 0.4305 -6.2812 1.5709 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307467212.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = -15.169563 kcal Electronic energy + Delta-G solvation = -12747.104700 eV Core-core repulsion = 10178.860829 eV Total energy + Delta-G solvation = -2568.243870 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.063 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.57781 -38.75705 -36.22864 -35.50611 -34.04107 -31.38631 -27.33483 -25.69497 -23.25276 -21.71494 -19.60969 -18.46653 -18.08152 -17.45030 -16.50019 -15.81911 -14.99400 -14.57586 -13.96229 -13.41807 -12.98655 -12.12556 -11.69235 -11.23112 -11.12495 -10.88273 -10.64244 -10.52797 -10.44043 -10.32499 -10.24676 -9.62906 -8.63173 -8.14258 -6.57720 -3.97601 1.21337 2.24147 2.98860 3.20063 3.23388 3.25430 3.76318 3.91394 4.17284 4.44337 4.55323 4.96066 5.15312 5.34940 5.41108 5.82452 6.04911 7.06848 7.42014 7.86586 8.36284 8.40999 9.00219 9.31566 9.82239 10.59012 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.061072 B = 0.009338 C = 0.008516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.364703 B = 2997.833263 C = 3287.134192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.541 5.541 10 C 0.442 3.558 11 O -0.573 6.573 12 C -0.126 4.126 13 H 0.140 0.860 14 C -0.124 4.124 15 C -0.073 4.073 16 H 0.168 0.832 17 N 0.025 4.975 18 O -0.099 6.099 19 O -0.212 6.212 20 H 0.275 0.725 21 H 0.394 0.606 22 H 0.129 0.871 23 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 -8.181 1.633 8.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.175 5.175 10 C 0.227 3.773 11 O -0.457 6.457 12 C -0.149 4.149 13 H 0.157 0.843 14 C -0.162 4.162 15 C -0.173 4.173 16 H 0.185 0.815 17 N 0.549 4.451 18 O -0.335 6.335 19 O -0.415 6.415 20 H 0.085 0.915 21 H 0.228 0.772 22 H 0.147 0.853 23 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.221 -8.140 1.485 8.879 hybrid contribution -0.160 0.739 -0.189 0.780 sum -3.381 -7.401 1.296 8.239 Atomic orbital electron populations 1.69600 1.06065 1.28748 1.49167 1.25337 0.95689 1.00018 0.96604 0.85836 0.78780 0.79832 0.79380 1.19676 1.20824 1.19583 1.19756 0.93614 0.81819 1.47876 0.87510 1.41721 1.09268 1.04255 1.62243 1.18722 0.87840 0.83636 0.87136 1.90726 1.12688 1.86442 1.55860 1.22861 0.99753 0.90267 1.01982 0.84251 1.23527 1.01145 1.00071 0.91462 1.24748 0.78935 1.03870 1.09782 0.81518 1.43230 1.03927 0.98018 0.99924 1.94528 1.73012 1.37439 1.28506 1.94465 1.66078 1.51340 1.29602 0.91493 0.77225 0.85288 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.54 13.05 55.50 0.72 -22.82 14 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 14 3 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 14 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 14 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 14 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 14 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 14 8 H 0.11 3.10 7.16 -52.49 -0.38 2.72 14 9 N -0.54 -13.31 5.29 -10.96 -0.06 -13.37 14 10 C 0.44 10.28 7.53 -10.99 -0.08 10.19 14 11 O -0.57 -15.68 12.49 -18.74 -0.23 -15.92 14 12 C -0.13 -2.05 6.19 -91.77 -0.57 -2.62 14 13 H 0.14 1.78 8.14 -51.93 -0.42 1.35 14 14 C -0.12 -1.61 9.72 -26.75 -0.26 -1.87 14 15 C -0.07 -1.12 6.90 -67.95 -0.47 -1.58 14 16 H 0.17 1.88 8.14 -51.93 -0.42 1.45 14 17 N 0.03 0.51 3.35 -4.91 -0.02 0.50 14 18 O -0.10 -2.23 15.49 -37.15 -0.58 -2.81 14 19 O -0.21 -4.53 19.24 -29.46 -0.57 -5.10 14 20 H 0.28 6.85 8.31 -40.82 -0.34 6.51 14 21 H 0.39 9.09 7.90 -40.82 -0.32 8.77 14 22 H 0.13 1.90 7.63 -51.93 -0.40 1.50 14 23 H 0.13 1.07 8.14 -51.93 -0.42 0.64 14 LS Contribution 220.70 15.07 3.33 3.33 Total: -1.00 -32.57 220.70 -5.54 -38.11 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -1.50 Total: 6.12 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.62 Total: -3.68 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.65 Total: -35.69 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.38 Total: -23.82 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -32.57 -5.54 -38.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307467212.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.941 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds