Wall clock time and date at job start Mon Mar 30 2020 02:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00142 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99862 * 3 2 1 7 7 C 1.40055 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99699 * 179.72926 * 7 2 1 9 9 C 1.46368 * 119.99884 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00310 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00240 * 179.97438 * 9 7 2 12 12 C 1.46499 * 120.00394 * 179.97438 * 11 9 7 13 13 H 1.08996 * 110.65576 * 325.70444 * 12 11 9 14 14 C 1.54604 * 110.73551 * 202.52305 * 12 11 9 15 15 O 1.44049 * 102.54916 * 216.50620 * 14 12 11 16 16 N 1.41458 * 107.84444 * 26.89203 * 15 14 12 17 17 C 1.35113 * 111.71754 * 341.09686 * 16 15 14 18 18 O 1.21281 * 126.41926 * 181.29851 * 17 16 15 19 19 H 0.96990 * 120.00456 * 359.97438 * 1 2 3 20 20 H 0.97008 * 119.99337 * 0.02562 * 11 9 7 21 21 H 1.09002 * 110.79233 * 334.76968 * 14 12 11 22 22 H 1.08998 * 110.79241 * 98.04976 * 14 12 11 23 23 H 0.97004 * 124.16003 * 161.24121 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 -0.0039 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4806 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2166 -4.9164 0.0011 13 1 0.2949 -4.8280 0.5761 14 6 2.0998 -6.0581 0.5549 15 8 1.7072 -7.1803 -0.2586 16 7 1.2476 -6.6773 -1.4982 17 6 0.9236 -5.3680 -1.4174 18 8 0.4822 -4.6789 -2.3125 19 1 -0.4850 0.8399 0.0004 20 1 2.9191 -3.6476 0.0009 21 1 3.1570 -5.8312 0.4168 22 1 1.8794 -6.2427 1.6063 23 1 1.1721 -7.2076 -2.3070 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307594174.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:49 Heat of formation + Delta-G solvation = -56.173040 kcal Electronic energy + Delta-G solvation = -12747.429177 eV Core-core repulsion = 10177.407262 eV Total energy + Delta-G solvation = -2570.021915 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.063 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23756 -37.17900 -36.99068 -33.41469 -32.31960 -31.30505 -29.06842 -26.07180 -23.33423 -21.22495 -19.65263 -18.26376 -17.15173 -16.52239 -15.65306 -15.35019 -14.95302 -14.09830 -13.73518 -13.67177 -13.44837 -12.39951 -12.21680 -12.02731 -11.16694 -11.01511 -10.82118 -10.50070 -10.27290 -9.82953 -8.88078 -8.85892 -7.76497 -7.66361 -6.21405 -4.68085 2.29477 2.81412 3.15739 3.20621 3.22586 4.02024 4.19130 4.46274 4.65064 4.74271 4.97905 5.29339 5.52227 5.81680 6.04464 6.87593 7.17816 7.40561 7.70115 7.88801 8.23594 8.39992 8.98842 9.37197 10.54738 10.72709 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.071140 B = 0.009084 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.497993 B = 3081.740809 C = 3216.285056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.566 6.566 11 N -0.745 5.745 12 C 0.104 3.896 13 H 0.125 0.875 14 C 0.027 3.973 15 O -0.148 6.148 16 N -0.605 5.605 17 C 0.498 3.502 18 O -0.479 6.479 19 H 0.270 0.730 20 H 0.386 0.614 21 H 0.082 0.918 22 H 0.120 0.880 23 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 -9.411 1.458 11.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.447 6.447 11 N -0.402 5.402 12 C -0.008 4.008 13 H 0.142 0.858 14 C -0.051 4.051 15 O -0.156 6.156 16 N -0.314 5.314 17 C 0.282 3.718 18 O -0.350 6.350 19 H 0.081 0.919 20 H 0.219 0.781 21 H 0.100 0.900 22 H 0.137 0.863 23 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 4.708 -9.045 1.111 10.257 hybrid contribution 1.017 0.479 -0.259 1.153 sum 5.724 -8.565 0.852 10.337 Atomic orbital electron populations 1.69999 1.07077 1.27566 1.34596 1.25715 0.94667 1.00350 0.92629 0.86380 0.79766 0.80857 0.79422 1.19273 1.20512 1.19245 1.20763 0.93546 0.88976 1.54568 0.91299 1.18308 0.87372 0.82044 0.76262 1.90626 1.13919 1.86091 1.54092 1.46130 1.08420 1.03065 1.82635 1.21749 0.98985 0.86925 0.93164 0.85766 1.24166 0.99394 0.85375 0.96158 1.90824 1.84874 1.24133 1.15749 1.47952 1.68537 1.11075 1.03884 1.22069 0.76714 0.80575 0.92439 1.90835 1.42750 1.56614 1.44769 0.91901 0.78128 0.90006 0.86254 0.72067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -23.08 11.83 55.55 0.66 -22.42 14 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 14 3 Si 0.91 20.12 29.56 -169.99 -5.02 15.10 14 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 14 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 14 6 H -0.27 -5.68 7.11 56.52 0.40 -5.27 14 7 C -0.54 -15.23 9.54 -35.63 -0.34 -15.57 14 8 H 0.07 1.74 7.85 -52.48 -0.41 1.33 14 9 C 0.56 15.75 7.75 -12.99 -0.10 15.65 14 10 O -0.57 -18.45 14.70 5.20 0.08 -18.37 14 11 N -0.74 -16.16 5.16 -55.03 -0.28 -16.44 14 12 C 0.10 1.94 3.40 -67.74 -0.23 1.71 14 13 H 0.12 2.52 7.62 -51.93 -0.40 2.12 14 14 C 0.03 0.34 7.84 38.00 0.30 0.64 14 15 O -0.15 -2.01 12.49 -11.40 -0.14 -2.15 14 16 N -0.60 -8.97 7.32 31.55 0.23 -8.74 14 17 C 0.50 9.89 8.35 -10.33 -0.09 9.80 14 18 O -0.48 -11.93 18.03 5.56 0.10 -11.83 14 19 H 0.27 7.41 8.29 -40.82 -0.34 7.07 14 20 H 0.39 7.09 8.39 -40.82 -0.34 6.75 14 21 H 0.08 0.91 7.81 -51.93 -0.41 0.50 14 22 H 0.12 1.20 8.14 -51.93 -0.42 0.78 14 23 H 0.43 5.15 8.96 -40.82 -0.37 4.78 14 LS Contribution 219.86 15.07 3.31 3.31 Total: -1.00 -36.84 219.86 -3.11 -39.95 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -1.48 Total: 7.02 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -0.55 Total: 14.56 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.60 Total: -47.60 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: 0.03 Total: -32.34 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -36.84 -3.11 -39.95 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307594174.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.225 kcal (2) G-P(sol) polarization free energy of solvation -36.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds