Wall clock time and date at job start Mon Mar 30 2020 02:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00142 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99862 * 3 2 1 7 7 C 1.40055 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99699 * 179.72926 * 7 2 1 9 9 C 1.46368 * 119.99884 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00310 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00240 * 179.97438 * 9 7 2 12 12 C 1.46499 * 120.00394 * 179.97438 * 11 9 7 13 13 H 1.08996 * 110.65576 * 325.70444 * 12 11 9 14 14 C 1.54604 * 110.73551 * 202.52305 * 12 11 9 15 15 O 1.44049 * 102.54916 * 216.50620 * 14 12 11 16 16 N 1.41458 * 107.84444 * 26.89203 * 15 14 12 17 17 C 1.35113 * 111.71754 * 341.09686 * 16 15 14 18 18 O 1.21281 * 126.41926 * 181.29851 * 17 16 15 19 19 H 0.96990 * 120.00456 * 359.97438 * 1 2 3 20 20 H 0.97008 * 119.99337 * 0.02562 * 11 9 7 21 21 H 1.09002 * 110.79233 * 334.76968 * 14 12 11 22 22 H 1.08998 * 110.79241 * 98.04976 * 14 12 11 23 23 H 0.97004 * 124.16003 * 161.24121 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 -0.0039 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4806 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2166 -4.9164 0.0011 13 1 0.2949 -4.8280 0.5761 14 6 2.0998 -6.0581 0.5549 15 8 1.7072 -7.1803 -0.2586 16 7 1.2476 -6.6773 -1.4982 17 6 0.9236 -5.3680 -1.4174 18 8 0.4822 -4.6789 -2.3125 19 1 -0.4850 0.8399 0.0004 20 1 2.9191 -3.6476 0.0009 21 1 3.1570 -5.8312 0.4168 22 1 1.8794 -6.2427 1.6063 23 1 1.1721 -7.2076 -2.3070 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307594174.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:49 Heat of formation + Delta-G solvation = -89.172734 kcal Electronic energy + Delta-G solvation = -12748.860151 eV Core-core repulsion = 10177.407262 eV Total energy + Delta-G solvation = -2571.452889 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.063 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69106 -39.10908 -38.62836 -35.27293 -34.43930 -32.65872 -30.72782 -28.07774 -24.65666 -22.94176 -21.48010 -19.83485 -18.93130 -18.02540 -17.38814 -17.15430 -16.46014 -15.91088 -15.30824 -15.14621 -14.96624 -14.32628 -14.13948 -13.57500 -13.02097 -12.73717 -12.62722 -12.14490 -12.04032 -11.54440 -10.90855 -10.20808 -9.91971 -9.60851 -8.29817 -6.87231 1.04671 1.23833 1.41619 1.45366 1.57172 2.24424 2.42401 2.73772 3.06843 3.34339 3.60886 3.78699 4.07725 4.56202 4.62631 5.31730 5.58820 5.80866 5.88349 6.02444 6.20586 6.85691 6.93966 7.43547 8.45718 8.65967 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.071140 B = 0.009084 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.497993 B = 3081.740809 C = 3216.285056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.025 3.975 3 Si 1.001 2.999 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.248 1.248 7 C -0.570 4.570 8 H 0.093 0.907 9 C 0.540 3.460 10 O -0.621 6.621 11 N -0.732 5.732 12 C 0.092 3.908 13 H 0.103 0.897 14 C 0.044 3.956 15 O -0.136 6.136 16 N -0.579 5.579 17 C 0.491 3.509 18 O -0.542 6.542 19 H 0.275 0.725 20 H 0.404 0.596 21 H 0.111 0.889 22 H 0.157 0.843 23 H 0.448 0.552 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.460 -9.947 2.202 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.172 1.172 7 C -0.607 4.607 8 H 0.111 0.889 9 C 0.344 3.656 10 O -0.507 6.507 11 N -0.389 5.389 12 C -0.019 4.019 13 H 0.120 0.880 14 C -0.033 4.033 15 O -0.143 6.143 16 N -0.287 5.287 17 C 0.276 3.724 18 O -0.418 6.418 19 H 0.084 0.916 20 H 0.240 0.760 21 H 0.128 0.872 22 H 0.174 0.826 23 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 7.197 -9.694 1.866 12.217 hybrid contribution 0.281 0.485 -0.459 0.725 sum 7.478 -9.209 1.407 11.946 Atomic orbital electron populations 1.70186 1.09650 1.29096 1.36131 1.27041 0.95554 1.05177 0.91208 0.85019 0.78118 0.74463 0.80353 1.18175 1.20128 1.17178 1.21384 0.94934 0.89661 1.54681 0.88857 1.18672 0.86948 0.84144 0.75789 1.90581 1.16252 1.87438 1.56430 1.45584 1.09227 1.02865 1.81202 1.21956 0.99466 0.87519 0.92995 0.87976 1.24358 0.99515 0.81982 0.97423 1.90868 1.84804 1.23892 1.14746 1.47620 1.66371 1.09641 1.05108 1.22153 0.76262 0.81846 0.92178 1.90801 1.45722 1.58689 1.46572 0.91550 0.76012 0.87154 0.82594 0.70103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.11 11.83 21.84 0.26 -50.85 14 2 C 0.03 1.42 5.50 85.31 0.47 1.89 14 3 Si 1.00 40.95 29.56 68.60 2.03 42.98 14 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 14 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 14 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 14 7 C -0.57 -32.14 9.54 24.83 0.24 -31.90 14 8 H 0.09 4.60 7.85 -2.91 -0.02 4.57 14 9 C 0.54 31.28 7.75 86.36 0.67 31.94 14 10 O -0.62 -42.26 14.70 -4.32 -0.06 -42.33 14 11 N -0.73 -31.44 5.16 -446.23 -2.30 -33.74 14 12 C 0.09 3.37 3.40 45.12 0.15 3.53 14 13 H 0.10 4.23 7.62 -2.39 -0.02 4.21 14 14 C 0.04 0.95 7.84 72.53 0.57 1.52 14 15 O -0.14 -3.16 12.49 -38.47 -0.48 -3.64 14 16 N -0.58 -16.02 7.32 -172.29 -1.26 -17.28 14 17 C 0.49 19.44 8.35 87.93 0.73 20.17 14 18 O -0.54 -27.89 18.03 -3.03 -0.05 -27.95 14 19 H 0.27 15.53 8.29 -92.72 -0.77 14.76 14 20 H 0.40 14.14 8.39 -92.70 -0.78 13.36 14 21 H 0.11 1.89 7.81 -2.39 -0.02 1.87 14 22 H 0.16 2.39 8.14 -2.39 -0.02 2.37 14 23 H 0.45 9.76 8.96 -92.71 -0.83 8.93 14 Total: -1.00 -84.39 219.86 0.62 -83.77 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.34 Total: 21.88 kcal Atomic # 6 Polarization: 24.33 SS G_CDS: 2.83 Total: 27.16 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -3.31 Total: -101.87 kcal Atomic # 8 Polarization: -73.32 SS G_CDS: -0.60 Total: -73.92 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -84.39 0.62 -83.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307594174.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.399 kcal (2) G-P(sol) polarization free energy of solvation -84.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds