Wall clock time and date at job start Mon Mar 30 2020 01:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81002 * 109.47004 * 179.97438 * 10 9 7 12 12 C 1.76193 * 100.00049 * 180.02562 * 11 10 9 13 13 N 1.31540 * 126.45243 * 0.02562 * 12 11 10 14 14 N 1.28428 * 110.49894 * 180.02562 * 13 12 11 15 15 N 1.28902 * 110.34129 * 0.02562 * 14 13 12 16 16 N 1.35401 * 126.45294 * 179.71562 * 12 11 10 17 17 H 0.97003 * 127.38439 * 359.97430 * 16 12 11 18 18 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 20 20 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 21 21 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 22 22 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3404 -5.2296 0.0013 12 6 2.6901 -6.3621 0.0019 13 7 3.9689 -6.0539 0.0023 14 7 4.6880 -7.1181 0.0022 15 7 3.9374 -8.1660 0.0012 16 7 2.6064 -7.7135 0.0080 17 1 1.8007 -8.2537 0.0132 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6241 -2.5568 0.8902 21 1 2.8720 -3.6043 -0.8894 22 1 2.8720 -3.6043 0.8905 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307616296.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:00 Heat of formation + Delta-G solvation = 96.850703 kcal Electronic energy + Delta-G solvation = -10071.221833 eV Core-core repulsion = 7982.881148 eV Total energy + Delta-G solvation = -2088.340685 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.043 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.80703 -34.00043 -33.76949 -32.17177 -31.02343 -25.63457 -24.52406 -22.96318 -21.37489 -19.04295 -17.03507 -16.64146 -16.34248 -14.57539 -14.33040 -13.95436 -13.23296 -12.61581 -12.24902 -11.79606 -11.44457 -11.15037 -11.11752 -10.81715 -10.67996 -10.38633 -10.30884 -9.81929 -9.28503 -8.52800 -7.81198 -6.16800 -4.21391 0.90130 0.92117 2.27554 2.33268 2.60112 3.25061 3.33199 3.38158 4.35753 4.50042 5.07514 5.20071 5.34428 5.81309 5.99808 6.39544 6.50250 7.34794 7.39667 7.78843 8.12944 8.43246 8.83475 9.43869 10.94058 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.079597 B = 0.007029 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.687545 B = 3982.677470 C = 4313.917417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.034 3.966 10 C -0.081 4.081 11 S 0.007 5.993 12 C 0.235 3.765 13 N -0.333 5.333 14 N -0.030 5.030 15 N -0.091 5.091 16 N -0.474 5.474 17 H 0.451 0.549 18 H 0.263 0.737 19 H 0.030 0.970 20 H 0.030 0.970 21 H 0.092 0.908 22 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 -10.848 0.013 10.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.082 0.918 9 C -0.005 4.005 10 C -0.230 4.230 11 S 0.234 5.766 12 C -0.151 4.151 13 N -0.191 5.191 14 N -0.027 5.027 15 N -0.080 5.080 16 N -0.203 5.203 17 H 0.299 0.701 18 H 0.073 0.927 19 H 0.048 0.952 20 H 0.048 0.952 21 H 0.110 0.890 22 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.848 -11.248 0.013 11.280 hybrid contribution 0.238 0.710 0.002 0.749 sum 1.086 -10.538 0.016 10.594 Atomic orbital electron populations 1.69960 1.06114 1.27035 1.49894 1.25010 0.94941 0.99472 0.94802 0.86409 0.80155 0.83048 0.77700 1.19468 1.20850 1.20855 1.21067 0.93338 0.89585 1.51967 0.91842 1.19029 0.93365 0.89361 0.98784 1.24218 1.02130 0.90098 1.06521 1.86174 1.01626 0.99446 1.89391 1.28289 1.00466 0.88140 0.98205 1.75054 0.98386 1.21312 1.24338 1.77855 1.23640 0.92537 1.08706 1.82346 0.83683 1.19081 1.22911 1.49082 1.10142 1.05113 1.55951 0.70059 0.92697 0.95214 0.95203 0.88963 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.29 55.43 0.74 -24.53 14 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 14 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 14 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 14 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 14 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 14 7 C -0.52 -13.71 9.11 -34.44 -0.31 -14.02 14 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 14 9 C 0.03 0.80 4.98 -27.88 -0.14 0.67 14 10 C -0.08 -1.55 5.17 37.16 0.19 -1.35 14 11 S 0.01 0.10 22.31 -107.50 -2.40 -2.30 14 12 C 0.23 3.58 8.45 -89.17 -0.75 2.82 14 13 N -0.33 -5.94 11.57 30.50 0.35 -5.59 14 14 N -0.03 -0.53 13.38 60.35 0.81 0.28 14 15 N -0.09 -1.38 14.01 60.35 0.85 -0.53 14 16 N -0.47 -5.94 7.56 30.49 0.23 -5.70 14 17 H 0.45 3.65 8.96 -182.23 -1.63 2.02 14 18 H 0.26 7.03 8.31 -40.82 -0.34 6.70 14 19 H 0.03 0.73 8.14 -51.93 -0.42 0.31 14 20 H 0.03 0.73 8.14 -51.93 -0.42 0.31 14 21 H 0.09 1.76 8.14 -51.92 -0.42 1.34 14 22 H 0.09 1.76 8.14 -51.91 -0.42 1.34 14 LS Contribution 223.72 15.07 3.37 3.37 Total: -1.00 -29.21 223.72 -5.05 -34.26 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: -2.87 Total: -4.59 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.11 Total: -10.35 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 2.97 Total: -36.08 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.40 Total: -2.30 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.21 -5.05 -34.26 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307616296.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.115 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds