Wall clock time and date at job start Mon Mar 30 2020 03:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 110.05806 * 2 1 4 4 C 1.50704 * 109.46879 * 301.41780 * 3 2 1 5 5 H 1.07992 * 120.00244 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99988 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99722 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 120.00246 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47024 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47211 * 119.99612 * 8 6 4 11 11 H 1.48502 * 109.47327 * 239.99793 * 8 6 4 12 12 C 1.53870 * 110.03302 * 121.41863 * 2 1 3 13 13 H 1.09004 * 110.03237 * 359.94506 * 12 2 1 14 14 O 1.42903 * 110.03353 * 238.57218 * 12 2 1 15 15 C 1.54268 * 106.60297 * 119.28394 * 12 2 1 16 16 C 1.54887 * 104.19181 * 336.39148 * 15 12 2 17 17 C 1.54266 * 110.03195 * 238.58325 * 2 1 3 18 18 H 1.08998 * 110.48643 * 23.00680 * 17 2 1 19 19 O 1.42901 * 110.48506 * 145.51665 * 17 2 1 20 20 H 1.09003 * 109.47354 * 298.58332 * 1 2 3 21 21 H 1.09001 * 109.47362 * 58.58258 * 1 2 3 22 22 H 1.09004 * 109.47178 * 178.58360 * 1 2 3 23 23 H 1.09004 * 109.46771 * 61.41407 * 3 2 1 24 24 H 1.08995 * 109.47280 * 181.41858 * 3 2 1 25 25 H 0.97006 * 119.99844 * 180.02562 * 7 6 4 26 26 H 0.96700 * 114.00311 * 179.97438 * 14 12 2 27 27 H 1.09000 * 110.48115 * 95.07002 * 15 12 2 28 28 H 1.09000 * 110.48525 * 217.71062 * 15 12 2 29 29 H 1.09003 * 110.75396 * 279.62456 * 16 15 12 30 30 H 1.08996 * 110.91402 * 156.32929 * 16 15 12 31 31 H 0.96710 * 113.99868 * 180.02562 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 1.5312 2.1630 -1.2126 5 1 0.8890 1.6505 -1.9133 6 6 1.8723 3.4816 -1.4273 7 7 2.6541 4.1060 -0.5737 8 14 1.2241 4.3811 -2.9306 9 1 0.3724 3.4625 -3.7281 10 1 0.4200 5.5523 -2.4982 11 1 2.3651 4.8435 -3.7610 12 6 2.0571 -0.7536 1.2337 13 1 1.2228 -1.1185 1.8329 14 8 2.8825 0.1093 2.0187 15 6 2.8874 -1.9407 0.7035 16 6 2.3280 -2.1901 -0.7191 17 6 2.0584 -0.7555 -1.2369 18 1 1.3061 -0.7695 -2.0255 19 8 3.2664 -0.1566 -1.7103 20 1 -0.3634 0.4917 0.9024 21 1 -0.3634 0.5357 -0.8770 22 1 -0.3634 -1.0274 -0.0254 23 1 1.7174 1.9471 0.9024 24 1 3.1443 1.4262 -0.0254 25 1 2.8938 5.0338 -0.7246 26 1 3.2454 -0.3080 2.8119 27 1 3.9439 -1.6766 0.6572 28 1 2.7401 -2.8197 1.3310 29 1 1.4031 -2.7652 -0.6751 30 1 3.0651 -2.6942 -1.3442 31 1 3.6427 -0.5917 -2.4877 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307683408.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:11 Heat of formation + Delta-G solvation = -139.738397 kcal Electronic energy + Delta-G solvation = -13907.903677 eV Core-core repulsion = 11573.631535 eV Total energy + Delta-G solvation = -2334.272142 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.62573 -37.12389 -35.47381 -34.55493 -32.70964 -28.78426 -27.78651 -26.15858 -24.05946 -21.91099 -19.53422 -18.58893 -17.84210 -17.51775 -16.59469 -16.09733 -15.77115 -15.13372 -14.28761 -14.02808 -13.79119 -13.49790 -13.09539 -12.92928 -12.74572 -12.68168 -12.64335 -12.23226 -11.99625 -11.65094 -11.33698 -10.73075 -10.70857 -10.62817 -10.43576 -10.38508 -8.03589 -6.09362 1.38769 1.40385 1.52058 2.47813 3.29133 3.39378 3.68938 3.78634 3.93504 4.16555 4.37894 4.52478 4.58630 4.71404 4.74988 4.93522 5.04164 5.04694 5.15996 5.22002 5.41384 5.47669 5.52209 5.72691 5.96633 6.14459 6.43798 7.01117 7.19152 7.28644 7.54835 9.09741 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.043766 B = 0.012192 C = 0.011363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.605807 B = 2295.990959 C = 2463.602822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.066 4.066 3 C 0.081 3.919 4 C -0.494 4.494 5 H 0.058 0.942 6 C -0.013 4.013 7 N -0.944 5.944 8 Si 0.958 3.042 9 H -0.259 1.259 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.099 3.901 13 H 0.070 0.930 14 O -0.580 6.580 15 C -0.142 4.142 16 C -0.143 4.143 17 C 0.114 3.886 18 H 0.054 0.946 19 O -0.563 6.563 20 H 0.043 0.957 21 H 0.051 0.949 22 H 0.077 0.923 23 H -0.034 1.034 24 H -0.014 1.014 25 H 0.255 0.745 26 H 0.380 0.620 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -14.813 0.188 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.067 4.067 3 C 0.044 3.956 4 C -0.532 4.532 5 H 0.076 0.924 6 C -0.208 4.208 7 N -0.587 5.587 8 Si 0.783 3.217 9 H -0.183 1.183 10 H -0.209 1.209 11 H -0.211 1.211 12 C 0.041 3.959 13 H 0.088 0.912 14 O -0.386 6.386 15 C -0.180 4.180 16 C -0.181 4.181 17 C 0.055 3.945 18 H 0.072 0.928 19 O -0.368 6.368 20 H 0.062 0.938 21 H 0.070 0.930 22 H 0.096 0.904 23 H -0.016 1.016 24 H 0.004 0.996 25 H 0.064 0.936 26 H 0.228 0.772 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.719 -13.842 0.247 14.108 hybrid contribution 0.294 0.378 -0.518 0.706 sum -2.424 -13.464 -0.271 13.683 Atomic orbital electron populations 1.21727 0.93130 1.01468 1.01615 1.21374 0.95695 0.96853 0.92735 1.18266 0.94284 0.89948 0.93108 1.21612 1.27600 0.95929 1.08101 0.92390 1.25949 0.96141 0.99153 0.99591 1.70189 1.38693 1.11236 1.38539 0.85511 0.77999 0.78515 0.79641 1.18276 1.20914 1.21105 1.22725 0.92245 0.89232 0.91745 0.91171 1.86835 1.68935 1.42290 1.40590 1.22968 0.99545 0.97877 0.97579 1.23124 1.02492 0.96040 0.96428 1.22468 0.86213 0.91256 0.94578 0.92828 1.86869 1.41172 1.59013 1.49781 0.93817 0.93027 0.90411 1.01570 0.99600 0.93638 0.77246 0.92410 0.88804 0.88522 0.89687 0.77983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 7.89 71.98 0.57 -3.95 16 2 C -0.07 -2.79 0.64 -51.46 -0.03 -2.83 16 3 C 0.08 4.67 2.64 29.85 0.08 4.74 16 4 C -0.49 -29.39 7.41 25.60 0.19 -29.21 16 5 H 0.06 3.27 6.45 -2.91 -0.02 3.25 16 6 C -0.01 -0.82 5.46 84.65 0.46 -0.36 16 7 N -0.94 -62.63 13.29 21.45 0.28 -62.35 16 8 Si 0.96 47.19 29.54 68.60 2.03 49.21 16 9 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 11 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 12 C 0.10 3.47 3.89 31.32 0.12 3.59 16 13 H 0.07 2.09 7.67 -2.38 -0.02 2.07 16 14 O -0.58 -23.54 11.44 -148.98 -1.70 -25.25 16 15 C -0.14 -3.91 6.53 31.67 0.21 -3.70 16 16 C -0.14 -3.65 6.62 31.88 0.21 -3.44 16 17 C 0.11 4.13 3.01 31.67 0.10 4.23 16 18 H 0.05 1.88 7.84 -2.39 -0.02 1.86 16 19 O -0.56 -23.70 11.25 -148.98 -1.68 -25.38 16 20 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.05 2.06 6.54 -2.39 -0.02 2.04 16 22 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 23 H -0.03 -2.23 7.87 -2.38 -0.02 -2.25 16 24 H -0.01 -0.96 7.05 -2.39 -0.02 -0.98 16 25 H 0.25 15.92 8.31 -92.70 -0.77 15.15 16 26 H 0.38 10.68 9.11 -74.06 -0.67 10.01 16 27 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.37 11.41 9.12 -74.05 -0.68 10.74 16 Total: -1.00 -79.47 249.67 0.61 -78.86 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -0.22 Total: 15.81 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 1.90 Total: -30.92 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.28 Total: -62.35 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -3.38 Total: -50.62 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Total: -79.47 0.61 -78.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307683408.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.879 kcal (2) G-P(sol) polarization free energy of solvation -79.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds