Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99834 * 2 1 4 4 H 1.48503 * 109.47134 * 240.00078 * 3 2 1 5 5 H 1.48496 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46659 * 120.00062 * 3 2 1 7 7 C 1.37875 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99831 * 0.02562 * 7 2 1 10 10 O 1.42906 * 113.38235 * 313.07563 * 9 7 2 11 11 C 1.53517 * 114.17065 * 180.02562 * 9 7 2 12 12 N 1.47479 * 87.99753 * 220.35504 * 11 9 7 13 13 C 1.46897 * 110.99965 * 138.66774 * 12 11 9 14 14 C 1.50701 * 109.47156 * 189.99845 * 13 12 11 15 15 N 1.34779 * 119.99809 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00048 * 0.02562 * 14 13 12 17 17 C 1.47487 * 87.83637 * 26.97912 * 12 11 9 18 18 H 0.96998 * 120.00131 * 0.02562 * 1 2 3 19 19 H 0.96696 * 113.99578 * 46.92800 * 10 9 7 20 20 H 1.09002 * 113.47888 * 105.55862 * 11 9 7 21 21 H 1.09003 * 113.47419 * 335.15196 * 11 9 7 22 22 H 1.08999 * 109.47564 * 310.00354 * 13 12 11 23 23 H 1.09004 * 109.47077 * 70.00202 * 13 12 11 24 24 H 0.96999 * 120.00293 * 0.02562 * 15 14 13 25 25 H 0.97006 * 120.00064 * 180.02562 * 15 14 13 26 26 H 1.09004 * 113.47787 * 87.75324 * 17 12 11 27 27 H 1.09001 * 113.47615 * 218.16496 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.1914 -2.5430 0.9560 11 6 2.1498 -3.7438 -0.0016 12 7 1.2097 -4.3590 -0.9569 13 6 1.9304 -5.0855 -2.0109 14 6 0.9636 -5.4887 -3.0942 15 7 1.4035 -6.1704 -4.1705 16 8 -0.2102 -5.1991 -2.9981 17 6 0.8566 -2.9974 -1.4004 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3731 -1.7579 0.9541 20 1 2.1858 -4.2533 0.9614 21 1 3.1398 -3.5645 -0.4209 22 1 2.7019 -4.4418 -2.4335 23 1 2.3931 -5.9766 -1.5867 24 1 2.3423 -6.4018 -4.2476 25 1 0.7813 -6.4297 -4.8680 26 1 1.5012 -2.6181 -2.1933 27 1 -0.2032 -2.8747 -1.6239 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307705951.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -46.993548 kcal Electronic energy + Delta-G solvation = -13114.876456 eV Core-core repulsion = 10681.085689 eV Total energy + Delta-G solvation = -2433.790767 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.69922 -38.18099 -34.19292 -33.41677 -32.01433 -29.47808 -26.13816 -24.82067 -22.92958 -20.15211 -18.60958 -17.50514 -16.84464 -16.44237 -15.20739 -14.93472 -14.65248 -14.01995 -13.58598 -13.56972 -12.35780 -12.03947 -11.88712 -11.43285 -11.11489 -10.81696 -10.76963 -10.35554 -9.98420 -9.52218 -9.49918 -9.23626 -8.61928 -8.15624 -7.83758 -6.23313 -4.33885 2.96864 3.22357 3.28157 3.29874 3.67873 4.27051 4.90273 5.04040 5.17953 5.52217 5.61458 5.93985 6.03785 6.32775 6.40390 6.71099 6.92300 7.11951 7.25830 7.37142 7.48660 7.79743 7.95311 8.04780 8.56450 8.67845 9.36015 9.74667 10.82778 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.052647 B = 0.009438 C = 0.009187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.712059 B = 2966.047639 C = 3047.108221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.247 3.753 10 O -0.569 6.569 11 C 0.001 3.999 12 N -0.453 5.453 13 C -0.004 4.004 14 C 0.516 3.484 15 N -0.866 5.866 16 O -0.518 6.518 17 C -0.013 4.013 18 H 0.272 0.728 19 H 0.390 0.610 20 H 0.074 0.926 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.095 0.905 24 H 0.397 0.603 25 H 0.397 0.603 26 H 0.054 0.946 27 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.037 -7.118 -6.018 11.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.205 3.795 10 O -0.381 6.381 11 C -0.127 4.127 12 N -0.176 5.176 13 C -0.136 4.136 14 C 0.300 3.700 15 N -0.431 5.431 16 O -0.392 6.392 17 C -0.142 4.142 18 H 0.083 0.917 19 H 0.246 0.754 20 H 0.092 0.908 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.113 0.887 24 H 0.225 0.775 25 H 0.227 0.773 26 H 0.072 0.928 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.869 -7.770 -5.415 10.649 hybrid contribution 1.184 1.546 -1.092 2.233 sum 6.053 -6.224 -6.506 10.850 Atomic orbital electron populations 1.69300 1.06136 1.27968 1.50219 1.25080 0.94977 0.99698 0.93398 0.86443 0.79509 0.82034 0.78768 1.20096 1.20992 1.19925 1.21523 0.93572 0.90530 1.51874 0.91580 1.19377 0.85064 0.90460 0.84569 1.86028 1.45004 1.48088 1.59025 1.24155 0.95221 0.96660 0.96687 1.68986 1.25529 1.14552 1.08487 1.22634 0.95528 1.01444 0.93977 1.20725 0.89644 0.76999 0.82595 1.43921 1.13525 1.61381 1.24314 1.90760 1.17869 1.52920 1.77611 1.24671 1.01501 0.86678 1.01371 0.91714 0.75387 0.90772 0.91733 0.91733 0.88687 0.77539 0.77323 0.92794 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 11.02 55.43 0.61 -24.11 15 2 C 0.07 1.89 5.40 -17.82 -0.10 1.80 15 3 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.54 -14.49 8.69 -34.44 -0.30 -14.79 15 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 15 9 C 0.25 6.49 1.57 -91.18 -0.14 6.35 15 10 O -0.57 -16.15 13.54 -35.23 -0.48 -16.63 15 11 C 0.00 0.03 7.12 -7.54 -0.05 -0.02 15 12 N -0.45 -10.03 6.06 -245.85 -1.49 -11.52 15 13 C 0.00 -0.06 5.31 -4.98 -0.03 -0.09 15 14 C 0.52 8.76 7.94 -10.98 -0.09 8.67 15 15 N -0.87 -9.54 8.87 31.22 0.28 -9.26 15 16 O -0.52 -11.56 16.60 5.55 0.09 -11.47 15 17 C -0.01 -0.32 6.14 -7.47 -0.05 -0.37 15 18 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 19 H 0.39 11.23 6.33 45.56 0.29 11.52 15 20 H 0.07 1.60 8.14 -51.93 -0.42 1.18 15 21 H 0.06 1.27 7.72 -51.93 -0.40 0.87 15 22 H 0.06 0.98 7.56 -51.93 -0.39 0.59 15 23 H 0.10 1.31 8.14 -51.93 -0.42 0.88 15 24 H 0.40 2.92 8.83 -40.82 -0.36 2.56 15 25 H 0.40 3.88 8.93 -40.82 -0.36 3.52 15 26 H 0.05 1.29 7.66 -51.93 -0.40 0.89 15 27 H 0.07 2.06 8.13 -51.93 -0.42 1.64 15 LS Contribution 236.69 15.07 3.57 3.57 Total: -1.00 -32.51 236.69 -5.63 -38.14 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -2.44 Total: 14.26 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.75 Total: 1.56 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.60 Total: -44.90 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.38 Total: -28.10 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.51 -5.63 -38.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307705951.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.851 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds