Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99834 * 2 1 4 4 H 1.48503 * 109.47134 * 240.00078 * 3 2 1 5 5 H 1.48496 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46659 * 120.00062 * 3 2 1 7 7 C 1.37875 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99831 * 0.02562 * 7 2 1 10 10 O 1.42906 * 113.38235 * 313.07563 * 9 7 2 11 11 C 1.53517 * 114.17065 * 180.02562 * 9 7 2 12 12 N 1.47479 * 87.99753 * 220.35504 * 11 9 7 13 13 C 1.46897 * 110.99965 * 138.66774 * 12 11 9 14 14 C 1.50701 * 109.47156 * 189.99845 * 13 12 11 15 15 N 1.34779 * 119.99809 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00048 * 0.02562 * 14 13 12 17 17 C 1.47487 * 87.83637 * 26.97912 * 12 11 9 18 18 H 0.96998 * 120.00131 * 0.02562 * 1 2 3 19 19 H 0.96696 * 113.99578 * 46.92800 * 10 9 7 20 20 H 1.09002 * 113.47888 * 105.55862 * 11 9 7 21 21 H 1.09003 * 113.47419 * 335.15196 * 11 9 7 22 22 H 1.08999 * 109.47564 * 310.00354 * 13 12 11 23 23 H 1.09004 * 109.47077 * 70.00202 * 13 12 11 24 24 H 0.96999 * 120.00293 * 0.02562 * 15 14 13 25 25 H 0.97006 * 120.00064 * 180.02562 * 15 14 13 26 26 H 1.09004 * 113.47787 * 87.75324 * 17 12 11 27 27 H 1.09001 * 113.47615 * 218.16496 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.1914 -2.5430 0.9560 11 6 2.1498 -3.7438 -0.0016 12 7 1.2097 -4.3590 -0.9569 13 6 1.9304 -5.0855 -2.0109 14 6 0.9636 -5.4887 -3.0942 15 7 1.4035 -6.1704 -4.1705 16 8 -0.2102 -5.1991 -2.9981 17 6 0.8566 -2.9974 -1.4004 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3731 -1.7579 0.9541 20 1 2.1858 -4.2533 0.9614 21 1 3.1398 -3.5645 -0.4209 22 1 2.7019 -4.4418 -2.4335 23 1 2.3931 -5.9766 -1.5867 24 1 2.3423 -6.4018 -4.2476 25 1 0.7813 -6.4297 -4.8680 26 1 1.5012 -2.6181 -2.1933 27 1 -0.2032 -2.8747 -1.6239 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307705951.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -78.275012 kcal Electronic energy + Delta-G solvation = -13116.232922 eV Core-core repulsion = 10681.085689 eV Total energy + Delta-G solvation = -2435.147233 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.31461 -39.74714 -36.17824 -34.63279 -34.09108 -31.10425 -28.01234 -26.66401 -24.66608 -21.49070 -20.52026 -19.32185 -18.17996 -17.78436 -17.07775 -16.59975 -16.41637 -15.71996 -15.34130 -15.09938 -14.04927 -13.85168 -13.65709 -13.34966 -12.83851 -12.62626 -12.54844 -12.22246 -11.98097 -11.16694 -10.92906 -10.64679 -10.62821 -10.08263 -9.64244 -8.23536 -6.42727 1.44738 1.46659 1.55201 1.67071 2.37927 2.52369 2.96787 3.30455 3.99173 4.03391 4.12144 4.38602 4.41004 4.47897 4.59608 4.93575 5.18745 5.36938 5.42008 5.75882 5.92254 5.96121 6.23033 6.55936 6.64688 7.30863 7.42183 7.55417 8.81984 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.052647 B = 0.009438 C = 0.009187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.712059 B = 2966.047639 C = 3047.108221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.021 3.979 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.213 3.787 10 O -0.586 6.586 11 C 0.017 3.983 12 N -0.471 5.471 13 C -0.007 4.007 14 C 0.513 3.487 15 N -0.833 5.833 16 O -0.584 6.584 17 C 0.000 4.000 18 H 0.274 0.726 19 H 0.382 0.618 20 H 0.077 0.923 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.134 0.866 24 H 0.419 0.581 25 H 0.407 0.593 26 H 0.059 0.941 27 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.393 -7.637 -6.823 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.179 4.179 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.594 4.594 8 H 0.093 0.907 9 C 0.172 3.828 10 O -0.397 6.397 11 C -0.111 4.111 12 N -0.194 5.194 13 C -0.139 4.139 14 C 0.298 3.702 15 N -0.399 5.399 16 O -0.463 6.463 17 C -0.129 4.129 18 H 0.083 0.917 19 H 0.237 0.763 20 H 0.095 0.905 21 H 0.111 0.889 22 H 0.107 0.893 23 H 0.151 0.849 24 H 0.251 0.749 25 H 0.238 0.762 26 H 0.077 0.923 27 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 7.293 -8.345 -6.259 12.728 hybrid contribution 0.478 1.608 -0.894 1.901 sum 7.771 -6.737 -7.154 12.528 Atomic orbital electron populations 1.69410 1.07628 1.28761 1.50812 1.25949 0.95749 1.03259 0.92898 0.85359 0.78149 0.77506 0.79103 1.19103 1.20979 1.19288 1.21850 0.94124 0.91275 1.52116 0.90655 1.19865 0.85528 0.92461 0.84936 1.86007 1.45777 1.47800 1.60156 1.24050 0.95596 0.94254 0.97209 1.68803 1.27086 1.13223 1.10253 1.22785 0.95441 1.02684 0.92969 1.20857 0.88694 0.76974 0.83705 1.43584 1.15041 1.58809 1.22499 1.90752 1.20390 1.55924 1.79185 1.24369 0.98895 0.88932 1.00731 0.91661 0.76291 0.90476 0.88869 0.89283 0.84866 0.74887 0.76166 0.92301 0.95001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.06 11.02 21.45 0.24 -51.83 15 2 C 0.02 1.10 5.40 84.65 0.46 1.56 15 3 Si 0.97 41.61 29.54 68.60 2.03 43.63 15 4 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 15 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 7 C -0.56 -29.75 8.69 25.60 0.22 -29.53 15 8 H 0.08 3.78 7.81 -2.91 -0.02 3.76 15 9 C 0.21 11.25 1.57 -11.15 -0.02 11.24 15 10 O -0.59 -34.20 13.54 -148.98 -2.02 -36.21 15 11 C 0.02 0.73 7.12 83.58 0.59 1.33 15 12 N -0.47 -20.36 6.06 -932.07 -5.65 -26.01 15 13 C -0.01 -0.22 5.31 85.56 0.45 0.23 15 14 C 0.51 16.46 7.94 87.66 0.70 17.15 15 15 N -0.83 -15.74 8.87 -173.53 -1.54 -17.28 15 16 O -0.58 -26.19 16.60 -3.04 -0.05 -26.25 15 17 C 0.00 0.02 6.14 83.62 0.51 0.54 15 18 H 0.27 14.55 8.31 -92.71 -0.77 13.78 15 19 H 0.38 22.96 6.33 -74.06 -0.47 22.49 15 20 H 0.08 3.20 8.14 -2.39 -0.02 3.18 15 21 H 0.09 3.36 7.72 -2.39 -0.02 3.34 15 22 H 0.09 2.33 7.56 -2.39 -0.02 2.31 15 23 H 0.13 3.05 8.14 -2.39 -0.02 3.03 15 24 H 0.42 4.36 8.83 -92.71 -0.82 3.55 15 25 H 0.41 6.85 8.93 -92.70 -0.83 6.02 15 26 H 0.06 2.81 7.66 -2.39 -0.02 2.79 15 27 H 0.03 1.83 8.13 -2.39 -0.02 1.81 15 Total: -1.00 -72.27 236.69 -4.98 -77.25 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.90 Total: 34.18 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 2.92 Total: 2.52 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -6.96 Total: -95.12 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -2.07 Total: -62.46 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -72.27 -4.98 -77.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307705951.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.026 kcal (2) G-P(sol) polarization free energy of solvation -72.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds