Wall clock time and date at job start Mon Mar 30 2020 02:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.82326 * 2 1 4 4 O 1.21213 * 119.99758 * 95.88318 * 3 2 1 5 5 O 1.34307 * 119.99699 * 276.16058 * 3 2 1 6 6 C 1.34923 * 117.00000 * 179.72351 * 5 3 2 7 7 H 1.08007 * 119.99533 * 0.02562 * 6 5 3 8 8 C 1.38749 * 120.00389 * 179.97438 * 6 5 3 9 9 N 1.31439 * 120.00041 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99647 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47439 * 89.99916 * 10 8 6 12 12 H 1.48507 * 109.46851 * 209.99661 * 10 8 6 13 13 H 1.48497 * 109.47241 * 329.99328 * 10 8 6 14 14 C 1.54383 * 109.82654 * 120.88395 * 2 1 3 15 15 C 1.55305 * 102.25112 * 98.24910 * 14 2 1 16 16 C 1.54946 * 100.94347 * 34.12950 * 15 14 2 17 17 O 1.43239 * 109.90482 * 239.06416 * 2 1 3 18 18 H 1.09002 * 109.47074 * 59.29973 * 1 2 3 19 19 H 1.09003 * 109.47168 * 179.29783 * 1 2 3 20 20 H 1.08995 * 109.47478 * 299.30196 * 1 2 3 21 21 H 0.97005 * 119.99848 * 180.02562 * 9 8 6 22 22 H 1.08996 * 110.84683 * 216.43565 * 14 2 1 23 23 H 1.08993 * 110.85201 * 340.05808 * 14 2 1 24 24 H 1.09003 * 111.12485 * 152.04774 * 15 14 2 25 25 H 1.09001 * 111.12491 * 276.21318 * 15 14 2 26 26 H 1.09000 * 110.30829 * 82.47195 * 16 15 14 27 27 H 1.08997 * 110.31241 * 204.54118 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 8 2.3478 1.9513 1.0442 5 8 2.1513 2.0917 -1.1565 6 6 2.6100 3.3586 -1.0857 7 1 2.8697 3.7862 -0.1285 8 6 2.7489 4.1118 -2.2426 9 7 3.1962 5.3459 -2.1737 10 14 2.3004 3.3720 -3.8982 11 1 0.8698 3.6431 -4.1903 12 1 3.1457 3.9797 -4.9572 13 1 2.5292 1.9052 -3.8632 14 6 2.0536 -0.7455 1.2464 15 6 2.3703 -2.1557 0.6781 16 6 2.8435 -1.7967 -0.7530 17 8 2.0177 -0.6924 -1.1552 18 1 -0.3633 0.5247 -0.8837 19 1 -0.3634 -1.0276 -0.0126 20 1 -0.3634 0.5029 0.8961 21 1 3.2930 5.8726 -2.9825 22 1 2.9561 -0.2709 1.6315 23 1 1.2845 -0.8014 2.0166 24 1 3.1660 -2.6383 1.2455 25 1 1.4760 -2.7784 0.6514 26 1 3.8924 -1.5002 -0.7413 27 1 2.6980 -2.6438 -1.4233 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307750265.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:02 Heat of formation + Delta-G solvation = -151.145961 kcal Electronic energy + Delta-G solvation = -13319.775429 eV Core-core repulsion = 10849.175523 eV Total energy + Delta-G solvation = -2470.599906 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.74556 -40.00928 -37.46335 -34.56179 -33.46794 -32.55070 -27.98056 -27.15893 -24.42447 -22.78012 -21.00882 -20.18258 -18.79461 -17.64843 -17.31386 -16.62600 -16.27247 -15.90959 -14.97635 -14.63291 -14.26535 -14.05672 -13.76803 -13.42634 -13.16078 -12.75173 -12.65875 -12.43005 -12.29582 -12.03708 -11.88890 -11.74350 -11.41405 -10.87812 -10.53176 -8.60853 -6.47108 1.18208 1.29140 1.44637 1.54212 2.23378 2.33212 2.66458 2.85622 3.46124 3.70646 3.98574 4.08811 4.25418 4.34490 4.59315 4.72924 4.77912 4.83622 4.87088 5.00191 5.11465 5.22754 5.41608 5.80946 5.92239 6.44140 6.76208 7.54641 8.52028 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.047533 B = 0.011701 C = 0.010609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.927219 B = 2392.295624 C = 2638.654650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.124 3.876 3 C 0.398 3.602 4 O -0.571 6.571 5 O -0.246 6.246 6 C -0.416 4.416 7 H 0.058 0.942 8 C 0.021 3.979 9 N -0.912 5.912 10 Si 0.979 3.021 11 H -0.256 1.256 12 H -0.259 1.259 13 H -0.258 1.258 14 C -0.134 4.134 15 C -0.135 4.135 16 C 0.030 3.970 17 O -0.382 6.382 18 H 0.056 0.944 19 H 0.113 0.887 20 H 0.078 0.922 21 H 0.291 0.709 22 H 0.062 0.938 23 H 0.114 0.886 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.049 0.951 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 -17.336 1.241 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.083 3.917 3 C 0.245 3.755 4 O -0.467 6.467 5 O -0.154 6.154 6 C -0.491 4.491 7 H 0.076 0.924 8 C -0.180 4.180 9 N -0.552 5.552 10 Si 0.799 3.201 11 H -0.181 1.181 12 H -0.183 1.183 13 H -0.182 1.182 14 C -0.171 4.171 15 C -0.172 4.172 16 C -0.046 4.046 17 O -0.302 6.302 18 H 0.076 0.924 19 H 0.132 0.868 20 H 0.097 0.903 21 H 0.101 0.899 22 H 0.081 0.919 23 H 0.132 0.868 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.068 0.932 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.541 -16.931 1.179 17.569 hybrid contribution 0.387 0.796 -0.082 0.889 sum -4.153 -16.135 1.097 16.697 Atomic orbital electron populations 1.22068 0.89314 1.05547 1.03205 1.22074 0.97278 0.83549 0.88775 1.24888 0.77987 0.90917 0.81688 1.90561 1.50756 1.71337 1.34086 1.83634 1.71072 1.26115 1.34628 1.20426 1.45686 0.86459 0.96560 0.92449 1.25541 0.94538 0.94834 1.03089 1.69697 1.43871 1.09329 1.32255 0.85133 0.79535 0.79520 0.75923 1.18060 1.18319 1.18202 1.23137 1.02825 0.95656 0.95505 1.23315 1.04337 0.95189 0.94344 1.23809 0.94131 0.88924 0.97725 1.88554 1.67415 1.44883 1.29348 0.92448 0.86811 0.90327 0.89905 0.91927 0.86764 0.87202 0.87131 0.93214 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 8.71 71.98 0.63 -3.57 15 2 C 0.12 4.54 1.21 -11.07 -0.01 4.53 15 3 C 0.40 20.61 6.74 71.24 0.48 21.09 15 4 O -0.57 -32.74 15.13 20.76 0.31 -32.43 15 5 O -0.25 -14.44 8.38 19.52 0.16 -14.28 15 6 C -0.42 -27.14 10.10 67.94 0.69 -26.46 15 7 H 0.06 4.20 7.09 -2.91 -0.02 4.18 15 8 C 0.02 1.25 5.49 84.87 0.47 1.72 15 9 N -0.91 -56.85 13.96 21.62 0.30 -56.55 15 10 Si 0.98 46.49 28.62 68.60 1.96 48.45 15 11 H -0.26 -11.41 7.11 99.48 0.71 -10.71 15 12 H -0.26 -11.21 7.11 99.48 0.71 -10.51 15 13 H -0.26 -12.34 7.11 99.48 0.71 -11.63 15 14 C -0.13 -3.73 5.74 31.86 0.18 -3.55 15 15 C -0.13 -2.52 7.16 32.05 0.23 -2.29 15 16 C 0.03 0.74 7.78 72.65 0.56 1.31 15 17 O -0.38 -13.87 10.50 -137.04 -1.44 -15.31 15 18 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 19 H 0.11 2.31 8.14 -2.39 -0.02 2.29 15 20 H 0.08 2.17 8.14 -2.39 -0.02 2.15 15 21 H 0.29 16.25 8.31 -92.70 -0.77 15.48 15 22 H 0.06 2.09 7.34 -2.39 -0.02 2.07 15 23 H 0.11 2.57 7.82 -2.39 -0.02 2.56 15 24 H 0.11 1.55 8.14 -2.39 -0.02 1.53 15 25 H 0.11 1.45 8.14 -2.39 -0.02 1.43 15 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 15 27 H 0.12 2.19 8.14 -2.39 -0.02 2.17 15 Total: -1.00 -78.87 238.40 5.68 -73.19 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.16 Total: 4.15 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 3.22 Total: -7.22 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.30 Total: -56.55 kcal Atomic # 8 Polarization: -61.06 SS G_CDS: -0.96 Total: -62.02 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.96 Total: 48.45 kcal Total: -78.87 5.68 -73.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307750265.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.958 kcal (2) G-P(sol) polarization free energy of solvation -78.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds