Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00130 * 2 1 4 4 H 1.48504 * 109.47195 * 270.00020 * 3 2 1 5 5 H 1.48507 * 109.47236 * 30.00061 * 3 2 1 6 6 H 1.48504 * 109.47093 * 150.00225 * 3 2 1 7 7 C 1.37879 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99799 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46859 * 179.97438 * 9 7 2 11 11 O 1.45205 * 109.46784 * 179.97438 * 10 9 7 12 12 C 1.34225 * 116.99775 * 180.02562 * 11 10 9 13 13 O 1.20828 * 120.00173 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99943 * 180.02562 * 12 11 10 15 15 C 1.54036 * 113.81709 * 180.02562 * 14 12 11 16 16 O 1.44179 * 85.66382 * 136.73615 * 15 14 12 17 17 C 1.44442 * 93.22864 * 335.92808 * 16 15 14 18 18 H 0.97005 * 119.99832 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47060 * 59.99389 * 9 7 2 20 20 H 1.09004 * 109.46827 * 299.99807 * 9 7 2 21 21 H 1.09003 * 109.46902 * 59.99648 * 10 9 7 22 22 H 1.08992 * 109.47129 * 299.99716 * 10 9 7 23 23 H 1.08992 * 113.00272 * 48.17069 * 14 12 11 24 24 H 1.09002 * 113.86404 * 250.95052 * 15 14 12 25 25 H 1.09002 * 113.86879 * 22.52496 * 15 14 12 26 26 H 1.09008 * 113.74590 * 269.91647 * 17 16 15 27 27 H 1.08995 * 114.06139 * 138.26913 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5191 -4.9196 0.0011 12 6 2.2501 -6.0453 0.0018 13 8 3.4568 -5.9822 0.0013 14 6 1.5660 -7.3881 0.0018 15 6 2.5391 -8.5821 0.0032 16 8 1.6579 -9.1585 0.9881 17 6 1.1471 -7.8726 1.4027 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6240 -2.5567 0.8904 21 1 2.8719 -3.6043 0.8905 22 1 2.8718 -3.6044 -0.8894 23 1 0.7767 -7.4640 -0.7460 24 1 2.5663 -9.1299 -0.9388 25 1 3.5312 -8.3421 0.3858 26 1 1.7135 -7.4165 2.2148 27 1 0.0705 -7.8556 1.5716 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308073415.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = -110.518691 kcal Electronic energy + Delta-G solvation = -12422.347831 eV Core-core repulsion = 9953.509655 eV Total energy + Delta-G solvation = -2468.838175 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.01367 -39.24351 -36.14918 -33.39088 -30.90818 -29.94361 -26.75443 -25.25420 -22.97256 -20.93363 -19.92629 -17.94283 -16.70563 -16.66587 -16.22919 -15.83747 -15.48377 -14.60867 -13.95132 -13.37015 -12.92753 -12.57233 -12.40048 -11.65998 -11.50029 -11.25779 -11.08193 -10.80074 -10.72086 -10.27047 -9.94877 -9.71335 -9.62556 -9.33334 -8.47894 -6.13856 -4.18532 2.34630 3.04852 3.26231 3.32532 3.36718 3.39709 3.99743 4.35922 4.77479 4.89966 5.12634 5.17106 5.22745 5.30664 5.64649 5.77313 5.84258 6.02375 6.02791 6.57727 6.89046 7.50666 7.57270 7.81971 8.08496 8.20265 8.86940 9.46124 10.97592 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.094408 B = 0.005982 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.514623 B = 4679.691691 C = 4863.455555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.073 3.927 11 O -0.354 6.354 12 C 0.459 3.541 13 O -0.515 6.515 14 C -0.161 4.161 15 C 0.058 3.942 16 O -0.379 6.379 17 C 0.059 3.941 18 H 0.264 0.736 19 H 0.028 0.972 20 H 0.029 0.971 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.136 0.864 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -13.072 0.432 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.001 3.999 11 O -0.269 6.269 12 C 0.301 3.699 13 O -0.404 6.404 14 C -0.180 4.180 15 C -0.019 4.019 16 O -0.298 6.298 17 C -0.018 4.018 18 H 0.073 0.927 19 H 0.047 0.953 20 H 0.047 0.953 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.154 0.846 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.818 -13.141 0.519 13.277 hybrid contribution 0.547 1.275 -0.163 1.397 sum 2.365 -11.866 0.357 12.105 Atomic orbital electron populations 1.69975 1.06097 1.27038 1.49687 1.24988 0.94931 0.99420 0.94813 0.86461 0.79759 0.82762 0.78266 1.20458 1.21014 1.19714 1.20978 0.93184 0.90108 1.52327 0.92247 1.19177 0.94175 0.89021 0.98909 1.23689 0.96440 0.78770 1.01014 1.86546 1.42425 1.15851 1.82125 1.23363 0.86528 0.87174 0.72832 1.90633 1.15678 1.88227 1.45878 1.24477 1.01108 0.90160 1.02241 1.23970 0.94622 0.89667 0.93642 1.89756 1.57947 1.25882 1.56197 1.23909 1.01769 0.82211 0.93924 0.92670 0.95340 0.95307 0.92239 0.92223 0.84612 0.88166 0.88426 0.89371 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.08 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 15 10 C 0.07 1.61 5.40 37.16 0.20 1.81 15 11 O -0.35 -6.90 10.22 -39.25 -0.40 -7.30 15 12 C 0.46 7.68 7.50 36.00 0.27 7.95 15 13 O -0.51 -9.81 15.64 -18.75 -0.29 -10.11 15 14 C -0.16 -1.94 4.51 -90.69 -0.41 -2.35 15 15 C 0.06 0.64 8.56 37.61 0.32 0.96 15 16 O -0.38 -4.65 12.47 -35.23 -0.44 -5.09 15 17 C 0.06 0.64 8.78 37.61 0.33 0.98 15 18 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 19 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.06 1.29 8.13 -51.93 -0.42 0.87 15 22 H 0.06 1.30 8.13 -51.93 -0.42 0.88 15 23 H 0.14 1.37 8.14 -51.93 -0.42 0.95 15 24 H 0.10 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.10 1.14 7.40 -51.93 -0.38 0.76 15 26 H 0.09 0.96 8.09 -51.92 -0.42 0.54 15 27 H 0.11 0.96 8.14 -51.93 -0.42 0.53 15 LS Contribution 245.67 15.07 3.70 3.70 Total: -1.00 -31.16 245.67 -4.87 -36.03 By element: Atomic # 1 Polarization: -1.09 SS G_CDS: -3.30 Total: -4.40 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 0.15 Total: -3.63 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.74 Total: -25.45 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -1.13 Total: -22.50 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.16 -4.87 -36.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308073415.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.491 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds