Wall clock time and date at job start Mon Mar 30 2020 02:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99842 * 2 1 4 4 H 1.48495 * 109.47383 * 269.99765 * 3 2 1 5 5 H 1.48502 * 109.47305 * 29.99676 * 3 2 1 6 6 H 1.48503 * 109.46918 * 149.99788 * 3 2 1 7 7 C 1.37876 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99596 * 0.02562 * 7 2 1 10 10 O 1.45201 * 109.46686 * 180.02562 * 9 7 2 11 11 C 1.34235 * 117.00145 * 180.02562 * 10 9 7 12 12 O 1.20824 * 119.99306 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00144 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.87329 * 304.30281 * 13 11 10 15 15 C 1.54104 * 109.87794 * 65.31129 * 13 11 10 16 16 C 1.54805 * 104.18715 * 121.60200 * 15 13 11 17 17 C 1.54993 * 102.09764 * 20.87963 * 16 15 13 18 18 O 1.43741 * 110.00334 * 183.21333 * 13 11 10 19 19 H 0.97003 * 119.99736 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47078 * 60.00794 * 9 7 2 21 21 H 1.08999 * 109.47562 * 299.99826 * 9 7 2 22 22 H 1.09004 * 110.48326 * 240.27802 * 15 13 11 23 23 H 1.09003 * 110.48376 * 2.92243 * 15 13 11 24 24 H 1.09004 * 110.90856 * 139.08289 * 16 15 13 25 25 H 1.09008 * 110.90524 * 262.68042 * 16 15 13 26 26 H 1.09000 * 110.61715 * 81.47543 * 17 16 15 27 27 H 1.08993 * 110.61889 * 204.31920 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1946 -3.6027 0.0018 11 6 1.6816 -4.8432 0.0014 12 8 0.4838 -5.0014 -0.0004 13 6 2.5996 -6.0382 0.0020 14 1 3.2841 -5.9801 -0.8443 15 6 3.3980 -6.0850 1.3193 16 6 3.0353 -7.4586 1.9342 17 6 2.5345 -8.2464 0.6968 18 8 1.8298 -7.2497 -0.0743 19 1 -0.4850 0.8401 -0.0004 20 1 0.6248 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 4.4679 -6.0271 1.1192 23 1 3.0884 -5.2766 1.9818 24 1 3.9143 -7.9346 2.3688 25 1 2.2435 -7.3557 2.6763 26 1 3.3755 -8.6461 0.1302 27 1 1.8611 -9.0482 0.9991 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308097070.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:55 Heat of formation + Delta-G solvation = -163.288204 kcal Electronic energy + Delta-G solvation = -12729.106780 eV Core-core repulsion = 10257.980347 eV Total energy + Delta-G solvation = -2471.126433 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67050 -39.90346 -37.44272 -35.09352 -33.22409 -31.27746 -29.72533 -25.69611 -24.30279 -22.70040 -21.71188 -19.16026 -18.47807 -17.89615 -17.67858 -16.83857 -16.62763 -15.97861 -15.46529 -14.62997 -14.50080 -14.35484 -13.72748 -13.11380 -12.85431 -12.79434 -12.69095 -12.23333 -12.20073 -11.97036 -11.78143 -11.56298 -11.34914 -10.78410 -10.72355 -8.40970 -6.58837 1.13764 1.39391 1.44948 1.54259 1.65617 2.35118 2.93429 2.98626 3.47001 3.72650 3.81193 4.02514 4.25146 4.34602 4.62633 4.72237 4.79154 4.84384 4.90535 4.99458 5.12519 5.33650 5.64469 5.73269 5.87321 6.51422 6.81020 7.13857 8.71845 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.076925 B = 0.007199 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.901370 B = 3888.290350 C = 4102.199567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.999 3.001 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.218 3.782 10 O -0.354 6.354 11 C 0.439 3.561 12 O -0.549 6.549 13 C 0.093 3.907 14 H 0.134 0.866 15 C -0.141 4.141 16 C -0.149 4.149 17 C 0.037 3.963 18 O -0.388 6.388 19 H 0.275 0.725 20 H -0.002 1.002 21 H -0.001 1.001 22 H 0.127 0.873 23 H 0.064 0.936 24 H 0.124 0.876 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.719 -12.577 2.896 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.820 3.180 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.592 4.592 8 H 0.100 0.900 9 C 0.145 3.855 10 O -0.270 6.270 11 C 0.283 3.717 12 O -0.440 6.440 13 C 0.034 3.966 14 H 0.152 0.848 15 C -0.179 4.179 16 C -0.186 4.186 17 C -0.038 4.038 18 O -0.307 6.307 19 H 0.083 0.917 20 H 0.016 0.984 21 H 0.017 0.983 22 H 0.145 0.855 23 H 0.083 0.917 24 H 0.142 0.858 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.000 -12.508 2.790 16.256 hybrid contribution -0.543 0.918 -0.018 1.067 sum 9.457 -11.591 2.771 15.214 Atomic orbital electron populations 1.70126 1.08302 1.29271 1.49288 1.26173 0.96004 1.03973 0.93250 0.84950 0.78328 0.75652 0.79040 1.19048 1.20105 1.17867 1.21340 0.94834 0.89100 1.53961 0.89969 1.20510 0.87813 0.81936 0.95196 1.86424 1.43037 1.15130 1.82456 1.24664 0.88919 0.86196 0.71922 1.90593 1.19295 1.87387 1.46676 1.22412 0.89653 0.81079 1.03471 0.84848 1.22986 1.02320 0.99497 0.93069 1.23207 1.03421 0.93862 0.98097 1.24005 0.97832 0.91038 0.90920 1.88964 1.49053 1.19524 1.73192 0.91657 0.98405 0.98311 0.85492 0.91700 0.85811 0.91508 0.88657 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.74 15 2 C 0.01 0.29 5.46 84.65 0.46 0.75 15 3 Si 1.00 43.21 29.54 68.60 2.03 45.23 15 4 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 15 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 7 C -0.56 -32.65 9.44 25.60 0.24 -32.40 15 8 H 0.08 4.55 7.81 -2.91 -0.02 4.53 15 9 C 0.22 12.95 5.22 71.24 0.37 13.32 15 10 O -0.35 -17.81 10.20 -51.47 -0.53 -18.33 15 11 C 0.44 20.00 7.06 71.23 0.50 20.50 15 12 O -0.55 -29.74 16.28 28.29 0.46 -29.28 15 13 C 0.09 2.90 3.95 30.22 0.12 3.01 15 14 H 0.13 3.37 8.14 -2.39 -0.02 3.35 15 15 C -0.14 -3.27 6.63 31.58 0.21 -3.06 15 16 C -0.15 -2.62 7.15 31.89 0.23 -2.39 15 17 C 0.04 0.71 7.72 72.66 0.56 1.27 15 18 O -0.39 -12.41 10.75 -130.29 -1.40 -13.81 15 19 H 0.27 15.46 8.31 -92.71 -0.77 14.69 15 20 H 0.00 -0.13 8.13 -2.39 -0.02 -0.15 15 21 H 0.00 -0.07 8.13 -2.39 -0.02 -0.09 15 22 H 0.13 2.02 8.14 -2.38 -0.02 2.00 15 23 H 0.06 1.82 7.69 -2.39 -0.02 1.80 15 24 H 0.12 1.24 8.14 -2.38 -0.02 1.22 15 25 H 0.07 1.35 8.14 -2.38 -0.02 1.33 15 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 15 27 H 0.11 1.76 8.14 -2.39 -0.02 1.74 15 Total: -1.00 -75.69 242.95 4.70 -70.99 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: 1.15 Total: 0.93 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 2.70 Total: 1.01 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.28 Total: -56.74 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -1.46 Total: -61.42 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.69 4.70 -70.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308097070.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.296 kcal (2) G-P(sol) polarization free energy of solvation -75.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds