Wall clock time and date at job start Mon Mar 30 2020 02:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99748 * 2 1 4 4 H 1.48503 * 109.47061 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47195 * 299.99503 * 3 2 1 6 6 H 1.48493 * 109.47477 * 60.00052 * 3 2 1 7 7 C 1.37875 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99927 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00088 * 0.02562 * 7 2 1 10 10 O 1.45204 * 109.47078 * 180.02562 * 9 7 2 11 11 C 1.34228 * 116.99738 * 179.97438 * 10 9 7 12 12 O 1.20828 * 120.00189 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.99882 * 179.97438 * 11 10 9 14 14 H 1.09000 * 110.27403 * 54.36485 * 13 11 10 15 15 C 1.55503 * 110.28603 * 292.20431 * 13 11 10 16 16 C 1.55305 * 100.69731 * 204.65124 * 15 13 11 17 17 C 1.54382 * 102.43395 * 34.13038 * 16 15 13 18 18 O 1.43232 * 107.59109 * 338.54226 * 17 16 15 19 19 H 0.96994 * 120.00387 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46995 * 59.99838 * 9 7 2 21 21 H 1.09002 * 109.46738 * 299.99572 * 9 7 2 22 22 H 1.08999 * 111.32643 * 86.78064 * 15 13 11 23 23 H 1.08995 * 111.14910 * 322.45486 * 15 13 11 24 24 H 1.09002 * 110.85041 * 275.83884 * 16 15 13 25 25 H 1.09001 * 110.84389 * 152.42021 * 16 15 13 26 26 H 1.09009 * 109.82643 * 98.05629 * 17 16 15 27 27 H 1.08999 * 109.83123 * 218.93188 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1947 -3.6028 0.0018 11 6 1.6817 -4.8431 0.0025 12 8 0.4838 -5.0015 0.0016 13 6 2.5997 -6.0382 0.0031 14 1 3.3022 -5.9743 0.8341 15 6 3.3653 -6.1307 -1.3472 16 6 3.6883 -7.6491 -1.3920 17 6 2.4518 -8.2723 -0.7093 18 8 1.8371 -7.2527 0.0871 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8897 21 1 0.6242 -2.5567 0.8904 22 1 4.2781 -5.5354 -1.3270 23 1 2.7273 -5.8399 -2.1817 24 1 4.5949 -7.8697 -0.8285 25 1 3.7792 -7.9961 -2.4213 26 1 1.7500 -8.6242 -1.4655 27 1 2.7593 -9.1037 -0.0750 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308097071.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:06 Heat of formation + Delta-G solvation = -140.625788 kcal Electronic energy + Delta-G solvation = -12694.697162 eV Core-core repulsion = 10224.553445 eV Total energy + Delta-G solvation = -2470.143717 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.03859 -38.49228 -35.45951 -32.90484 -32.19303 -29.99626 -27.68991 -24.12612 -22.46326 -21.73864 -19.97525 -17.52193 -16.81990 -16.16314 -15.87458 -15.32358 -15.04916 -14.59717 -13.95267 -13.36788 -12.87014 -12.32686 -11.92194 -11.84198 -11.48295 -11.33915 -11.05303 -11.01460 -10.95059 -10.30601 -9.90277 -9.67716 -9.39797 -9.24786 -8.52674 -6.22225 -4.27896 2.88192 3.15036 3.23497 3.30509 3.37010 4.09906 4.31149 4.42668 4.75330 4.91337 5.09118 5.13814 5.19371 5.57035 5.61877 5.64253 5.78129 5.83261 6.01799 6.84689 6.92846 7.22322 7.46940 7.80868 8.01944 8.61325 8.85982 9.36801 10.88582 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.076966 B = 0.007138 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.709689 B = 3921.557103 C = 4179.707431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.528 4.528 8 H 0.072 0.928 9 C 0.205 3.795 10 O -0.356 6.356 11 C 0.448 3.552 12 O -0.504 6.504 13 C 0.089 3.911 14 H 0.106 0.894 15 C -0.140 4.140 16 C -0.155 4.155 17 C 0.049 3.951 18 O -0.358 6.358 19 H 0.267 0.733 20 H 0.029 0.971 21 H 0.030 0.970 22 H 0.099 0.901 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.425 -12.205 -2.438 15.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.091 0.909 9 C 0.134 3.866 10 O -0.272 6.272 11 C 0.289 3.711 12 O -0.392 6.392 13 C 0.030 3.970 14 H 0.124 0.876 15 C -0.178 4.178 16 C -0.193 4.193 17 C -0.028 4.028 18 O -0.277 6.277 19 H 0.077 0.923 20 H 0.047 0.953 21 H 0.048 0.952 22 H 0.118 0.882 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.703 -12.104 -2.319 14.534 hybrid contribution 0.288 0.903 -0.101 0.953 sum 7.991 -11.201 -2.419 13.970 Atomic orbital electron populations 1.69990 1.06168 1.27543 1.49160 1.24972 0.95047 0.99558 0.94731 0.86173 0.79856 0.82035 0.77788 1.19341 1.20663 1.20654 1.21035 0.94289 0.88626 1.52670 0.90937 1.20974 0.87588 0.79950 0.98134 1.86418 1.44241 1.14560 1.82018 1.23137 0.88241 0.85617 0.74136 1.90628 1.16894 1.87041 1.44631 1.22480 0.91076 0.83420 1.00007 0.87621 1.23284 1.01612 0.96568 0.96312 1.23147 0.98711 0.95116 1.02294 1.23200 0.94187 0.90986 0.94385 1.88515 1.50943 1.19233 1.68967 0.92303 0.95270 0.95232 0.88199 0.89679 0.90089 0.89626 0.91097 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.93 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 3 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 15 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.53 -15.24 9.44 -34.44 -0.33 -15.57 15 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 15 9 C 0.20 5.78 5.22 36.01 0.19 5.97 15 10 O -0.36 -8.65 10.20 -39.25 -0.40 -9.05 15 11 C 0.45 9.87 7.31 36.00 0.26 10.14 15 12 O -0.50 -12.94 16.30 -25.32 -0.41 -13.36 15 13 C 0.09 1.44 3.98 -26.56 -0.11 1.33 15 14 H 0.11 1.46 8.14 -51.93 -0.42 1.04 15 15 C -0.14 -1.76 6.60 -24.18 -0.16 -1.92 15 16 C -0.16 -1.45 7.00 -24.78 -0.17 -1.62 15 17 C 0.05 0.55 7.80 37.88 0.30 0.85 15 18 O -0.36 -5.96 10.61 -54.60 -0.58 -6.53 15 19 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 20 H 0.03 0.87 8.13 -51.93 -0.42 0.45 15 21 H 0.03 0.89 8.13 -51.93 -0.42 0.47 15 22 H 0.10 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.08 1.15 8.06 -51.93 -0.42 0.74 15 24 H 0.08 0.62 8.14 -51.93 -0.42 0.19 15 25 H 0.09 0.65 8.14 -51.93 -0.42 0.22 15 26 H 0.07 0.75 8.14 -51.92 -0.42 0.33 15 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 LS Contribution 243.36 15.07 3.67 3.67 Total: -1.00 -33.34 243.36 -5.47 -38.81 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -3.34 Total: -4.67 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.12 Total: 0.78 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -1.39 Total: -28.94 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.34 -5.47 -38.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308097071.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.814 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds