Wall clock time and date at job start Mon Mar 30 2020 02:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99748 * 2 1 4 4 H 1.48503 * 109.47061 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47195 * 299.99503 * 3 2 1 6 6 H 1.48493 * 109.47477 * 60.00052 * 3 2 1 7 7 C 1.37875 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99927 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00088 * 0.02562 * 7 2 1 10 10 O 1.45204 * 109.47078 * 180.02562 * 9 7 2 11 11 C 1.34228 * 116.99738 * 179.97438 * 10 9 7 12 12 O 1.20828 * 120.00189 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.99882 * 179.97438 * 11 10 9 14 14 H 1.09000 * 110.27403 * 54.36485 * 13 11 10 15 15 C 1.55503 * 110.28603 * 292.20431 * 13 11 10 16 16 C 1.55305 * 100.69731 * 204.65124 * 15 13 11 17 17 C 1.54382 * 102.43395 * 34.13038 * 16 15 13 18 18 O 1.43232 * 107.59109 * 338.54226 * 17 16 15 19 19 H 0.96994 * 120.00387 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46995 * 59.99838 * 9 7 2 21 21 H 1.09002 * 109.46738 * 299.99572 * 9 7 2 22 22 H 1.08999 * 111.32643 * 86.78064 * 15 13 11 23 23 H 1.08995 * 111.14910 * 322.45486 * 15 13 11 24 24 H 1.09002 * 110.85041 * 275.83884 * 16 15 13 25 25 H 1.09001 * 110.84389 * 152.42021 * 16 15 13 26 26 H 1.09009 * 109.82643 * 98.05629 * 17 16 15 27 27 H 1.08999 * 109.83123 * 218.93188 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1947 -3.6028 0.0018 11 6 1.6817 -4.8431 0.0025 12 8 0.4838 -5.0015 0.0016 13 6 2.5997 -6.0382 0.0031 14 1 3.3022 -5.9743 0.8341 15 6 3.3653 -6.1307 -1.3472 16 6 3.6883 -7.6491 -1.3920 17 6 2.4518 -8.2723 -0.7093 18 8 1.8371 -7.2527 0.0871 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8897 21 1 0.6242 -2.5567 0.8904 22 1 4.2781 -5.5354 -1.3270 23 1 2.7273 -5.8399 -2.1817 24 1 4.5949 -7.8697 -0.8285 25 1 3.7792 -7.9961 -2.4213 26 1 1.7500 -8.6242 -1.4655 27 1 2.7593 -9.1037 -0.0750 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308097071.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:03 Heat of formation + Delta-G solvation = -163.392901 kcal Electronic energy + Delta-G solvation = -12695.684418 eV Core-core repulsion = 10224.553445 eV Total energy + Delta-G solvation = -2471.130973 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.63375 -39.93164 -37.44593 -35.08884 -33.23503 -31.30260 -29.74674 -25.75166 -24.28573 -22.62554 -21.66995 -19.19774 -18.64045 -17.71963 -17.66672 -16.98493 -16.54502 -16.25460 -15.25392 -14.69956 -14.39960 -14.17718 -13.79456 -13.09877 -12.98861 -12.83508 -12.79081 -12.30684 -12.20696 -11.88356 -11.78395 -11.55404 -11.35877 -10.73316 -10.63586 -8.40772 -6.58457 1.12646 1.39691 1.43844 1.54545 1.65201 2.35114 2.93472 2.94591 3.40040 3.69759 3.86082 4.07317 4.12590 4.31521 4.63388 4.72398 4.81336 4.84952 4.89323 4.99032 5.19202 5.34239 5.64901 5.82932 5.87450 6.52116 6.81351 7.14250 8.72285 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.076966 B = 0.007138 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.709689 B = 3921.557103 C = 4179.707431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.217 3.783 10 O -0.353 6.353 11 C 0.440 3.560 12 O -0.549 6.549 13 C 0.094 3.906 14 H 0.137 0.863 15 C -0.140 4.140 16 C -0.138 4.138 17 C 0.036 3.964 18 O -0.393 6.393 19 H 0.274 0.726 20 H 0.000 1.000 21 H -0.002 1.002 22 H 0.120 0.880 23 H 0.067 0.933 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.047 -12.426 -2.764 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.821 3.179 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.591 4.591 8 H 0.101 0.899 9 C 0.145 3.855 10 O -0.269 6.269 11 C 0.284 3.716 12 O -0.440 6.440 13 C 0.036 3.964 14 H 0.154 0.846 15 C -0.178 4.178 16 C -0.175 4.175 17 C -0.039 4.039 18 O -0.313 6.313 19 H 0.083 0.917 20 H 0.017 0.983 21 H 0.016 0.984 22 H 0.138 0.862 23 H 0.086 0.914 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.090 0.910 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.343 -12.367 -2.652 16.339 hybrid contribution -0.601 0.847 -0.005 1.038 sum 9.742 -11.520 -2.656 15.319 Atomic orbital electron populations 1.70127 1.08299 1.29209 1.49377 1.26173 0.96003 1.03978 0.93282 0.84902 0.78829 0.75990 0.78226 1.17715 1.19654 1.19752 1.21372 0.94849 0.89076 1.53814 0.89936 1.20522 0.87827 0.81939 0.95226 1.86423 1.43013 1.15084 1.82398 1.24628 0.88879 0.86162 0.71960 1.90597 1.19315 1.87392 1.46705 1.22728 0.89653 0.80683 1.03356 0.84574 1.23372 1.01407 0.99719 0.93272 1.23153 0.98577 0.91730 1.04008 1.23557 0.95145 0.90432 0.94795 1.88487 1.52622 1.20017 1.70164 0.91668 0.98253 0.98406 0.86195 0.91437 0.87324 0.87291 0.90957 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.62 15 2 C 0.00 0.27 5.46 84.65 0.46 0.73 15 3 Si 1.00 43.12 29.54 68.60 2.03 45.15 15 4 H -0.25 -10.25 7.11 99.48 0.71 -9.54 15 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 15 7 C -0.55 -32.46 9.44 25.60 0.24 -32.21 15 8 H 0.08 4.56 7.81 -2.91 -0.02 4.53 15 9 C 0.22 12.86 5.22 71.24 0.37 13.24 15 10 O -0.35 -17.64 10.20 -51.39 -0.52 -18.16 15 11 C 0.44 19.95 7.31 71.23 0.52 20.47 15 12 O -0.55 -29.71 16.30 28.24 0.46 -29.25 15 13 C 0.09 2.95 3.98 30.71 0.12 3.07 15 14 H 0.14 3.45 8.14 -2.39 -0.02 3.43 15 15 C -0.14 -3.21 6.60 32.25 0.21 -2.99 15 16 C -0.14 -2.02 7.00 31.86 0.22 -1.80 15 17 C 0.04 0.73 7.80 72.45 0.56 1.29 15 18 O -0.39 -12.74 10.61 -130.46 -1.38 -14.13 15 19 H 0.27 15.38 8.31 -92.71 -0.77 14.61 15 20 H 0.00 -0.03 8.13 -2.39 -0.02 -0.05 15 21 H 0.00 -0.13 8.13 -2.39 -0.02 -0.15 15 22 H 0.12 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.07 1.78 8.06 -2.39 -0.02 1.76 15 24 H 0.11 1.07 8.14 -2.39 -0.02 1.05 15 25 H 0.11 1.16 8.14 -2.39 -0.02 1.14 15 26 H 0.07 1.40 8.14 -2.38 -0.02 1.38 15 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 15 Total: -1.00 -75.27 243.36 4.74 -70.53 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: 1.15 Total: 0.69 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 2.72 Total: 1.79 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -1.45 Total: -61.54 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -75.27 4.74 -70.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308097071.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.862 kcal (2) G-P(sol) polarization free energy of solvation -75.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds