Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47446 * 2 1 4 4 C 1.50699 * 109.47007 * 120.00094 * 2 1 3 5 5 H 1.08001 * 120.00016 * 85.93996 * 4 2 1 6 6 C 1.37873 * 120.00043 * 265.93984 * 4 2 1 7 7 N 1.31520 * 120.00097 * 177.91068 * 6 4 2 8 8 Si 1.86802 * 119.99956 * 357.90765 * 6 4 2 9 9 H 1.48497 * 109.46875 * 274.93396 * 8 6 4 10 10 H 1.48501 * 109.46871 * 34.93648 * 8 6 4 11 11 H 1.48504 * 109.46663 * 154.93381 * 8 6 4 12 12 O 1.45201 * 109.47061 * 239.99743 * 2 1 3 13 13 C 1.34234 * 116.99654 * 90.00561 * 12 2 1 14 14 O 1.20826 * 120.00074 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99979 * 179.97438 * 13 12 2 16 16 C 1.54027 * 113.81603 * 278.50518 * 15 13 12 17 17 O 1.44448 * 85.42572 * 223.23762 * 16 15 13 18 18 C 1.44175 * 93.38023 * 24.08663 * 17 16 15 19 19 H 1.08991 * 109.47202 * 296.63782 * 1 2 3 20 20 H 1.08999 * 109.46923 * 56.64323 * 1 2 3 21 21 H 1.09001 * 109.47004 * 176.63712 * 1 2 3 22 22 H 0.96996 * 119.99728 * 179.97438 * 7 6 4 23 23 H 1.08998 * 112.99881 * 50.33141 * 15 13 12 24 24 H 1.08997 * 113.86546 * 337.33875 * 16 15 13 25 25 H 1.09006 * 113.86802 * 109.04945 * 16 15 13 26 26 H 1.08990 * 113.86835 * 221.77103 * 18 17 16 27 27 H 1.08998 * 113.98128 * 90.07223 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1499 -1.7840 1.2240 6 6 2.3418 0.0101 2.3644 7 7 2.7409 -0.6136 3.4514 8 14 2.1943 1.8723 2.3570 9 1 3.4425 2.4655 1.8136 10 1 1.0444 2.2743 1.5077 11 1 1.9788 2.3572 3.7440 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9975 1.2517 -2.2506 15 6 2.7194 -0.5770 -3.5492 16 6 4.2441 -0.7943 -3.5747 17 8 4.1742 -0.3084 -4.9332 18 6 2.9519 0.4198 -4.7003 19 1 -0.3633 0.4607 0.9185 20 1 -0.3633 0.5651 -0.8584 21 1 -0.3633 -1.0259 -0.0603 22 1 2.9590 -0.1066 4.2490 23 1 2.1445 -1.4568 -3.8382 24 1 4.7943 -0.1388 -2.8997 25 1 4.5421 -1.8397 -3.4936 26 1 2.2271 0.3354 -5.5098 27 1 3.1044 1.4472 -4.3697 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308125372.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = -104.036730 kcal Electronic energy + Delta-G solvation = -12980.911081 eV Core-core repulsion = 10512.353984 eV Total energy + Delta-G solvation = -2468.557096 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.78161 -38.99492 -35.87424 -33.14225 -30.96202 -29.93112 -26.58432 -25.45922 -23.37377 -20.66917 -19.51829 -17.87764 -16.79536 -16.47211 -16.32089 -15.59507 -15.00008 -14.48754 -13.55355 -12.92625 -12.71308 -12.64028 -12.37699 -11.77851 -11.56808 -11.25724 -11.14031 -11.02924 -10.71142 -10.06261 -9.86732 -9.72420 -9.50511 -9.17691 -8.78397 -6.32031 -4.36560 2.66944 3.15780 3.25204 3.30279 3.41630 3.57063 4.21553 4.21969 4.92935 5.03660 5.08012 5.34524 5.43917 5.48195 5.83765 5.96210 6.01247 6.09563 6.37545 6.44399 6.61674 7.07928 7.28697 7.45633 8.16061 8.53856 8.77652 9.26640 10.79278 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.049982 B = 0.009571 C = 0.009406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.063052 B = 2924.755239 C = 2976.161293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.181 3.819 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.086 0.914 6 C 0.082 3.918 7 N -0.881 5.881 8 Si 0.870 3.130 9 H -0.271 1.271 10 H -0.261 1.261 11 H -0.281 1.281 12 O -0.344 6.344 13 C 0.454 3.546 14 O -0.523 6.523 15 C -0.161 4.161 16 C 0.059 3.941 17 O -0.382 6.382 18 C 0.057 3.943 19 H 0.065 0.935 20 H 0.029 0.971 21 H 0.056 0.944 22 H 0.271 0.729 23 H 0.133 0.867 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 1.007 -11.658 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.128 3.872 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.104 0.896 6 C -0.122 4.122 7 N -0.518 5.518 8 Si 0.696 3.304 9 H -0.196 1.196 10 H -0.185 1.185 11 H -0.206 1.206 12 O -0.259 6.259 13 C 0.297 3.703 14 O -0.414 6.414 15 C -0.180 4.180 16 C -0.018 4.018 17 O -0.301 6.301 18 C -0.019 4.019 19 H 0.084 0.916 20 H 0.048 0.952 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.150 0.850 24 H 0.107 0.893 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.276 1.327 -11.605 11.684 hybrid contribution -0.276 1.044 0.424 1.160 sum -0.552 2.371 -11.181 11.443 Atomic orbital electron populations 1.22261 0.97504 1.01158 1.00281 1.20995 0.91472 0.94069 0.80640 0.93606 1.20788 1.45641 0.96497 0.92856 0.89616 1.24900 0.93467 0.98585 0.95272 1.69852 1.43204 1.36335 1.02387 0.86965 0.79971 0.85693 0.77821 1.19591 1.18498 1.20622 1.86680 1.75119 1.43377 1.20736 1.23337 0.74609 0.86088 0.86282 1.90588 1.49071 1.16942 1.84820 1.24449 0.99489 1.01760 0.92315 1.23909 0.92241 1.01908 0.83723 1.89717 1.44638 1.67930 1.27792 1.23943 0.86205 0.96502 0.95296 0.91647 0.95151 0.92495 0.91924 0.84960 0.89272 0.87595 0.88406 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.50 37.16 0.35 -3.05 15 2 C 0.18 4.50 2.16 -27.88 -0.06 4.44 15 3 H 0.05 1.19 4.49 -51.93 -0.23 0.96 15 4 C -0.52 -14.63 9.25 -34.44 -0.32 -14.95 15 5 H 0.09 2.59 8.06 -52.49 -0.42 2.17 15 6 C 0.08 2.33 5.47 -17.82 -0.10 2.23 15 7 N -0.88 -26.00 13.96 55.43 0.77 -25.22 15 8 Si 0.87 21.23 26.69 -169.99 -4.54 16.70 15 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 10 H -0.26 -6.19 6.82 56.52 0.39 -5.81 15 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 12 O -0.34 -7.75 9.86 -39.27 -0.39 -8.14 15 13 C 0.45 8.85 7.47 36.01 0.27 9.12 15 14 O -0.52 -11.40 15.13 -18.75 -0.28 -11.68 15 15 C -0.16 -2.29 4.49 -90.69 -0.41 -2.70 15 16 C 0.06 0.78 8.79 37.64 0.33 1.11 15 17 O -0.38 -5.35 12.46 -35.23 -0.44 -5.79 15 18 C 0.06 0.74 8.57 37.64 0.32 1.06 15 19 H 0.06 1.43 7.82 -51.93 -0.41 1.02 15 20 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 23 H 0.13 1.57 8.14 -51.93 -0.42 1.15 15 24 H 0.09 1.22 8.09 -51.93 -0.42 0.80 15 25 H 0.11 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.10 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.10 1.32 7.42 -51.93 -0.39 0.93 15 LS Contribution 239.73 15.07 3.61 3.61 Total: -1.00 -31.12 239.73 -4.00 -35.12 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -3.13 Total: -1.85 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 0.39 Total: -2.74 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.77 Total: -25.22 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -1.11 Total: -25.61 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.54 Total: 16.70 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.12 -4.00 -35.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308125372.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.918 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds