Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47446 * 2 1 4 4 C 1.50699 * 109.47007 * 120.00094 * 2 1 3 5 5 H 1.08001 * 120.00016 * 85.93996 * 4 2 1 6 6 C 1.37873 * 120.00043 * 265.93984 * 4 2 1 7 7 N 1.31520 * 120.00097 * 177.91068 * 6 4 2 8 8 Si 1.86802 * 119.99956 * 357.90765 * 6 4 2 9 9 H 1.48497 * 109.46875 * 274.93396 * 8 6 4 10 10 H 1.48501 * 109.46871 * 34.93648 * 8 6 4 11 11 H 1.48504 * 109.46663 * 154.93381 * 8 6 4 12 12 O 1.45201 * 109.47061 * 239.99743 * 2 1 3 13 13 C 1.34234 * 116.99654 * 90.00561 * 12 2 1 14 14 O 1.20826 * 120.00074 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99979 * 179.97438 * 13 12 2 16 16 C 1.54027 * 113.81603 * 278.50518 * 15 13 12 17 17 O 1.44448 * 85.42572 * 223.23762 * 16 15 13 18 18 C 1.44175 * 93.38023 * 24.08663 * 17 16 15 19 19 H 1.08991 * 109.47202 * 296.63782 * 1 2 3 20 20 H 1.08999 * 109.46923 * 56.64323 * 1 2 3 21 21 H 1.09001 * 109.47004 * 176.63712 * 1 2 3 22 22 H 0.96996 * 119.99728 * 179.97438 * 7 6 4 23 23 H 1.08998 * 112.99881 * 50.33141 * 15 13 12 24 24 H 1.08997 * 113.86546 * 337.33875 * 16 15 13 25 25 H 1.09006 * 113.86802 * 109.04945 * 16 15 13 26 26 H 1.08990 * 113.86835 * 221.77103 * 18 17 16 27 27 H 1.08998 * 113.98128 * 90.07223 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1499 -1.7840 1.2240 6 6 2.3418 0.0101 2.3644 7 7 2.7409 -0.6136 3.4514 8 14 2.1943 1.8723 2.3570 9 1 3.4425 2.4655 1.8136 10 1 1.0444 2.2743 1.5077 11 1 1.9788 2.3572 3.7440 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9975 1.2517 -2.2506 15 6 2.7194 -0.5770 -3.5492 16 6 4.2441 -0.7943 -3.5747 17 8 4.1742 -0.3084 -4.9332 18 6 2.9519 0.4198 -4.7003 19 1 -0.3633 0.4607 0.9185 20 1 -0.3633 0.5651 -0.8584 21 1 -0.3633 -1.0259 -0.0603 22 1 2.9590 -0.1066 4.2490 23 1 2.1445 -1.4568 -3.8382 24 1 4.7943 -0.1388 -2.8997 25 1 4.5421 -1.8397 -3.4936 26 1 2.2271 0.3354 -5.5098 27 1 3.1044 1.4472 -4.3697 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308125372.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = -125.689831 kcal Electronic energy + Delta-G solvation = -12981.850030 eV Core-core repulsion = 10512.353984 eV Total energy + Delta-G solvation = -2469.496045 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.07893 -40.46243 -37.60584 -35.20222 -32.77502 -31.26071 -27.60427 -27.47923 -24.88745 -22.35600 -20.97685 -19.56980 -18.64302 -17.97745 -17.58370 -16.81027 -16.57865 -16.25618 -15.16188 -14.72603 -14.48240 -14.08863 -13.75813 -13.54086 -13.11745 -12.98645 -12.67101 -12.50520 -12.30815 -11.96448 -11.53433 -11.32039 -11.17970 -10.90645 -10.79580 -8.48417 -6.58610 1.14787 1.24183 1.27997 1.38066 1.88036 2.18182 2.51624 2.89265 3.09369 3.77982 4.02073 4.06513 4.19942 4.31032 4.53838 4.56123 4.61190 4.80039 4.88741 4.90644 4.97745 5.28879 5.36358 5.62103 6.12583 6.50292 6.83618 7.09495 8.66906 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.049982 B = 0.009571 C = 0.009406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.063052 B = 2924.755239 C = 2976.161293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.181 3.819 3 H 0.036 0.964 4 C -0.533 4.533 5 H 0.049 0.951 6 C 0.035 3.965 7 N -0.923 5.923 8 Si 0.927 3.073 9 H -0.270 1.270 10 H -0.249 1.249 11 H -0.267 1.267 12 O -0.356 6.356 13 C 0.451 3.549 14 O -0.547 6.547 15 C -0.156 4.156 16 C 0.058 3.942 17 O -0.389 6.389 18 C 0.061 3.939 19 H 0.065 0.935 20 H 0.048 0.952 21 H 0.064 0.936 22 H 0.276 0.724 23 H 0.162 0.838 24 H 0.079 0.921 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 1.722 -13.216 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.054 0.946 4 C -0.570 4.570 5 H 0.067 0.933 6 C -0.166 4.166 7 N -0.561 5.561 8 Si 0.750 3.250 9 H -0.195 1.195 10 H -0.173 1.173 11 H -0.192 1.192 12 O -0.272 6.272 13 C 0.296 3.704 14 O -0.439 6.439 15 C -0.175 4.175 16 C -0.019 4.019 17 O -0.308 6.308 18 C -0.015 4.015 19 H 0.084 0.916 20 H 0.067 0.933 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.180 0.820 24 H 0.097 0.903 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.743 2.037 -13.182 13.359 hybrid contribution -0.095 0.751 0.835 1.127 sum -0.839 2.788 -12.347 12.686 Atomic orbital electron populations 1.22166 0.95325 1.02069 1.01100 1.20796 0.93030 0.92909 0.80487 0.94620 1.20925 1.46064 0.95095 0.94917 0.93308 1.25649 0.93036 1.03183 0.94712 1.69957 1.44587 1.38341 1.03225 0.86043 0.80259 0.80007 0.78677 1.19499 1.17250 1.19153 1.86639 1.75705 1.43729 1.21138 1.24347 0.73569 0.85897 0.86623 1.90571 1.50056 1.18088 1.85157 1.24748 1.00134 1.03045 0.89554 1.24038 0.91330 1.03180 0.83328 1.89725 1.45144 1.68078 1.27857 1.24074 0.86327 0.95491 0.95595 0.91645 0.93313 0.91734 0.91430 0.82029 0.90292 0.85150 0.85151 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.34 9.50 71.98 0.68 -5.65 15 2 C 0.18 8.91 2.16 29.85 0.06 8.97 15 3 H 0.04 1.82 4.49 -2.39 -0.01 1.81 15 4 C -0.53 -30.43 9.25 25.60 0.24 -30.19 15 5 H 0.05 3.07 8.06 -2.91 -0.02 3.04 15 6 C 0.04 2.00 5.47 84.65 0.46 2.47 15 7 N -0.92 -55.32 13.96 21.45 0.30 -55.02 15 8 Si 0.93 43.39 26.69 68.60 1.83 45.22 15 9 H -0.27 -12.51 7.11 99.48 0.71 -11.80 15 10 H -0.25 -11.08 6.82 99.48 0.68 -10.41 15 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 12 O -0.36 -15.79 9.86 -51.45 -0.51 -16.30 15 13 C 0.45 16.87 7.47 71.24 0.53 17.40 15 14 O -0.55 -23.05 15.13 21.96 0.33 -22.72 15 15 C -0.16 -4.02 4.49 -10.84 -0.05 -4.07 15 16 C 0.06 1.40 8.79 72.29 0.64 2.04 15 17 O -0.39 -9.83 12.46 -148.98 -1.86 -11.68 15 18 C 0.06 1.40 8.57 72.30 0.62 2.02 15 19 H 0.06 2.75 7.82 -2.39 -0.02 2.73 15 20 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 21 H 0.06 2.60 8.14 -2.39 -0.02 2.58 15 22 H 0.28 15.28 8.31 -92.71 -0.77 14.51 15 23 H 0.16 3.23 8.14 -2.39 -0.02 3.21 15 24 H 0.08 2.07 8.09 -2.39 -0.02 2.05 15 25 H 0.13 2.52 8.14 -2.38 -0.02 2.50 15 26 H 0.13 2.14 8.14 -2.39 -0.02 2.12 15 27 H 0.08 2.16 7.42 -2.39 -0.02 2.14 15 Total: -1.00 -66.68 239.73 4.42 -62.26 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.13 Total: 5.25 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 3.19 Total: -7.01 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.30 Total: -55.02 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -2.03 Total: -50.70 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.83 Total: 45.22 kcal Total: -66.68 4.42 -62.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308125372.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.426 kcal (2) G-P(sol) polarization free energy of solvation -66.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds