Wall clock time and date at job start Mon Mar 30 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09012 * 109.47406 * 2 1 4 4 C 1.50704 * 109.47351 * 240.00158 * 2 1 3 5 5 H 1.07994 * 119.99648 * 275.00189 * 4 2 1 6 6 C 1.37882 * 119.99945 * 94.99271 * 4 2 1 7 7 N 1.31513 * 119.99700 * 184.91925 * 6 4 2 8 8 Si 1.86802 * 120.00088 * 4.92085 * 6 4 2 9 9 H 1.48502 * 109.47035 * 84.83076 * 8 6 4 10 10 H 1.48495 * 109.47167 * 204.83156 * 8 6 4 11 11 H 1.48498 * 109.47152 * 324.83407 * 8 6 4 12 12 O 1.45201 * 109.47386 * 119.99689 * 2 1 3 13 13 C 1.34222 * 117.00524 * 270.00055 * 12 2 1 14 14 O 1.20829 * 119.99655 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00378 * 179.97438 * 13 12 2 16 16 C 1.53363 * 114.56833 * 180.02562 * 15 13 12 17 17 O 1.43347 * 88.49511 * 220.44334 * 16 15 13 18 18 C 1.43350 * 88.32367 * 28.12859 * 17 16 15 19 19 H 1.08992 * 109.47133 * 175.03301 * 1 2 3 20 20 H 1.09008 * 109.47261 * 295.03499 * 1 2 3 21 21 H 1.08997 * 109.47184 * 55.03004 * 1 2 3 22 22 H 0.96999 * 119.99755 * 180.02562 * 7 6 4 23 23 H 1.09000 * 113.56170 * 314.27998 * 15 13 12 24 24 H 1.09000 * 113.39158 * 105.52427 * 16 15 13 25 25 H 1.08997 * 113.39261 * 335.36770 * 16 15 13 26 26 H 1.08999 * 113.39075 * 86.74286 * 18 17 16 27 27 H 1.09003 * 113.39367 * 216.90107 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2290 6 6 2.3601 0.0122 -2.3581 7 7 2.7058 -0.6131 -3.4623 8 14 2.3133 1.8792 -2.3175 9 1 3.5989 2.3950 -1.7823 10 1 2.1054 2.3992 -3.6928 11 1 1.1985 2.3275 -1.4450 12 8 2.0140 -0.6844 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9973 1.2517 2.2506 15 6 2.7183 -0.5772 3.5495 16 6 2.9057 0.3922 4.7230 17 8 4.1155 -0.3020 5.0540 18 6 4.2466 -0.6472 3.6689 19 1 -0.3633 -1.0237 -0.0890 20 1 -0.3634 0.4349 0.9312 21 1 -0.3633 0.5890 -0.8421 22 1 2.9367 -0.1048 -4.2555 23 1 2.2007 -1.5020 3.8041 24 1 2.1327 0.3024 5.4862 25 1 3.0701 1.4234 4.4106 26 1 4.7611 0.1124 3.0804 27 1 4.6492 -1.6474 3.5084 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308125373.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:24 Heat of formation + Delta-G solvation = -101.435741 kcal Electronic energy + Delta-G solvation = -12975.140271 eV Core-core repulsion = 10506.695962 eV Total energy + Delta-G solvation = -2468.444309 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10834 -39.14024 -35.88406 -33.14282 -31.04052 -30.09832 -26.29856 -25.47508 -23.50811 -20.71145 -19.57703 -17.92147 -16.79122 -16.44793 -16.36880 -15.65575 -15.03458 -14.48937 -13.59987 -12.92025 -12.68859 -12.60995 -12.43412 -11.98022 -11.72383 -11.13820 -11.03893 -10.93936 -10.76691 -10.08121 -9.93306 -9.75475 -9.52693 -9.19335 -8.77443 -6.32717 -4.37103 2.63972 3.15484 3.24921 3.29934 3.40227 3.81037 4.14907 4.21247 4.89906 5.01450 5.13833 5.28616 5.44209 5.48288 5.73593 5.85937 5.96147 6.10620 6.35815 6.44693 6.62275 7.08413 7.28443 7.45361 8.15767 8.53710 8.77330 9.26063 10.78563 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.050305 B = 0.009469 C = 0.009385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.466919 B = 2956.228151 C = 2982.925595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.180 3.820 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.086 0.914 6 C 0.083 3.917 7 N -0.881 5.881 8 Si 0.870 3.130 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.261 1.261 12 O -0.343 6.343 13 C 0.460 3.540 14 O -0.523 6.523 15 C -0.163 4.163 16 C 0.050 3.950 17 O -0.368 6.368 18 C 0.052 3.948 19 H 0.058 0.942 20 H 0.029 0.971 21 H 0.062 0.938 22 H 0.271 0.729 23 H 0.137 0.863 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 1.222 11.588 11.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.127 3.873 3 H 0.065 0.935 4 C -0.557 4.557 5 H 0.104 0.896 6 C -0.122 4.122 7 N -0.517 5.517 8 Si 0.696 3.304 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.185 1.185 12 O -0.259 6.259 13 C 0.302 3.698 14 O -0.414 6.414 15 C -0.183 4.183 16 C -0.026 4.026 17 O -0.287 6.287 18 C -0.025 4.025 19 H 0.077 0.923 20 H 0.048 0.952 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.155 0.845 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.115 1.529 11.554 11.655 hybrid contribution -0.166 1.053 -0.369 1.128 sum -0.281 2.582 11.185 11.483 Atomic orbital electron populations 1.22235 0.97421 1.01680 0.99711 1.21047 0.91551 0.94133 0.80565 0.93511 1.20795 1.45540 0.96351 0.93033 0.89600 1.24915 0.93495 0.98624 0.95168 1.69851 1.43853 1.36274 1.01704 0.86959 0.79907 0.85751 0.77825 1.19571 1.20621 1.18529 1.86683 1.75045 1.43447 1.20696 1.23087 0.74664 0.85938 0.86076 1.90593 1.49094 1.16903 1.84803 1.23941 0.99419 1.02306 0.92598 1.23618 0.87481 0.96977 0.94572 1.89873 1.43005 1.71974 1.23810 1.23545 0.92967 1.03081 0.82896 0.92318 0.95150 0.91908 0.91906 0.84537 0.88788 0.88627 0.89428 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.53 37.15 0.35 -3.00 15 2 C 0.18 4.46 2.22 -27.89 -0.06 4.39 15 3 H 0.05 1.21 4.31 -51.92 -0.22 0.99 15 4 C -0.52 -14.59 9.25 -34.44 -0.32 -14.91 15 5 H 0.09 2.59 8.06 -52.49 -0.42 2.17 15 6 C 0.08 2.33 5.47 -17.82 -0.10 2.23 15 7 N -0.88 -25.91 13.96 55.43 0.77 -25.14 15 8 Si 0.87 21.19 26.99 -169.99 -4.59 16.60 15 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 11 H -0.26 -6.21 6.82 56.52 0.39 -5.82 15 12 O -0.34 -7.73 9.86 -39.24 -0.39 -8.11 15 13 C 0.46 8.92 7.52 36.01 0.27 9.19 15 14 O -0.52 -11.33 15.20 -18.75 -0.28 -11.61 15 15 C -0.16 -2.32 4.76 -91.35 -0.43 -2.75 15 16 C 0.05 0.64 8.11 24.60 0.20 0.84 15 17 O -0.37 -5.10 12.74 -35.23 -0.45 -5.55 15 18 C 0.05 0.69 8.33 24.64 0.21 0.89 15 19 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 20 H 0.03 0.60 8.14 -51.92 -0.42 0.18 15 21 H 0.06 1.35 8.14 -51.93 -0.42 0.93 15 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 23 H 0.14 1.63 8.14 -51.93 -0.42 1.21 15 24 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.10 1.29 7.47 -51.93 -0.39 0.90 15 26 H 0.09 1.18 8.10 -51.93 -0.42 0.76 15 27 H 0.10 1.14 8.14 -51.93 -0.42 0.72 15 LS Contribution 240.07 15.07 3.62 3.62 Total: -1.00 -30.87 240.07 -4.34 -35.21 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -3.14 Total: -1.92 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 0.12 Total: -3.11 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.77 Total: -25.14 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -1.12 Total: -25.28 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.59 Total: 16.60 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.87 -4.34 -35.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308125373.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.221 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds