Wall clock time and date at job start Mon Mar 30 2020 02:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09012 * 109.47406 * 2 1 4 4 C 1.50704 * 109.47351 * 240.00158 * 2 1 3 5 5 H 1.07994 * 119.99648 * 275.00189 * 4 2 1 6 6 C 1.37882 * 119.99945 * 94.99271 * 4 2 1 7 7 N 1.31513 * 119.99700 * 184.91925 * 6 4 2 8 8 Si 1.86802 * 120.00088 * 4.92085 * 6 4 2 9 9 H 1.48502 * 109.47035 * 84.83076 * 8 6 4 10 10 H 1.48495 * 109.47167 * 204.83156 * 8 6 4 11 11 H 1.48498 * 109.47152 * 324.83407 * 8 6 4 12 12 O 1.45201 * 109.47386 * 119.99689 * 2 1 3 13 13 C 1.34222 * 117.00524 * 270.00055 * 12 2 1 14 14 O 1.20829 * 119.99655 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00378 * 179.97438 * 13 12 2 16 16 C 1.53363 * 114.56833 * 180.02562 * 15 13 12 17 17 O 1.43347 * 88.49511 * 220.44334 * 16 15 13 18 18 C 1.43350 * 88.32367 * 28.12859 * 17 16 15 19 19 H 1.08992 * 109.47133 * 175.03301 * 1 2 3 20 20 H 1.09008 * 109.47261 * 295.03499 * 1 2 3 21 21 H 1.08997 * 109.47184 * 55.03004 * 1 2 3 22 22 H 0.96999 * 119.99755 * 180.02562 * 7 6 4 23 23 H 1.09000 * 113.56170 * 314.27998 * 15 13 12 24 24 H 1.09000 * 113.39158 * 105.52427 * 16 15 13 25 25 H 1.08997 * 113.39261 * 335.36770 * 16 15 13 26 26 H 1.08999 * 113.39075 * 86.74286 * 18 17 16 27 27 H 1.09003 * 113.39367 * 216.90107 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2290 6 6 2.3601 0.0122 -2.3581 7 7 2.7058 -0.6131 -3.4623 8 14 2.3133 1.8792 -2.3175 9 1 3.5989 2.3950 -1.7823 10 1 2.1054 2.3992 -3.6928 11 1 1.1985 2.3275 -1.4450 12 8 2.0140 -0.6844 1.1856 13 6 2.2172 0.0640 2.2811 14 8 1.9973 1.2517 2.2506 15 6 2.7183 -0.5772 3.5495 16 6 2.9057 0.3922 4.7230 17 8 4.1155 -0.3020 5.0540 18 6 4.2466 -0.6472 3.6689 19 1 -0.3633 -1.0237 -0.0890 20 1 -0.3634 0.4349 0.9312 21 1 -0.3633 0.5890 -0.8421 22 1 2.9367 -0.1048 -4.2555 23 1 2.2007 -1.5020 3.8041 24 1 2.1327 0.3024 5.4862 25 1 3.0701 1.4234 4.4106 26 1 4.7611 0.1124 3.0804 27 1 4.6492 -1.6474 3.5084 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308125373.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:22 Heat of formation + Delta-G solvation = -122.691883 kcal Electronic energy + Delta-G solvation = -12976.062007 eV Core-core repulsion = 10506.695962 eV Total energy + Delta-G solvation = -2469.366045 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.33243 -40.66867 -37.61317 -35.19743 -32.79471 -31.47348 -27.48857 -27.31312 -25.00662 -22.39078 -21.04337 -19.61352 -18.64918 -17.99218 -17.55094 -16.89356 -16.58699 -16.24836 -15.19086 -14.73959 -14.48204 -14.12143 -13.68455 -13.56079 -13.21008 -13.00180 -12.86190 -12.58948 -12.03735 -11.94100 -11.52423 -11.34380 -11.19906 -10.90003 -10.89268 -8.48444 -6.58496 1.12903 1.24376 1.28322 1.38166 1.87191 2.18240 2.74811 2.89678 3.01802 3.78082 3.98417 4.11499 4.20883 4.26229 4.53916 4.56234 4.61041 4.71629 4.81901 4.87790 4.92030 5.29385 5.36935 5.62138 6.12890 6.50550 6.84002 7.09558 8.66903 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.050305 B = 0.009469 C = 0.009385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.466919 B = 2956.228151 C = 2982.925595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.180 3.820 3 H 0.038 0.962 4 C -0.533 4.533 5 H 0.049 0.951 6 C 0.036 3.964 7 N -0.922 5.922 8 Si 0.928 3.072 9 H -0.268 1.268 10 H -0.267 1.267 11 H -0.250 1.250 12 O -0.356 6.356 13 C 0.457 3.543 14 O -0.546 6.546 15 C -0.159 4.159 16 C 0.055 3.945 17 O -0.373 6.373 18 C 0.051 3.949 19 H 0.062 0.938 20 H 0.049 0.951 21 H 0.064 0.936 22 H 0.276 0.724 23 H 0.164 0.836 24 H 0.124 0.876 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 2.019 13.119 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.127 3.873 3 H 0.056 0.944 4 C -0.570 4.570 5 H 0.067 0.933 6 C -0.165 4.165 7 N -0.560 5.560 8 Si 0.750 3.250 9 H -0.194 1.194 10 H -0.192 1.192 11 H -0.174 1.174 12 O -0.272 6.272 13 C 0.302 3.698 14 O -0.438 6.438 15 C -0.178 4.178 16 C -0.022 4.022 17 O -0.292 6.292 18 C -0.025 4.025 19 H 0.081 0.919 20 H 0.068 0.932 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.182 0.818 24 H 0.142 0.858 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.468 2.321 13.105 13.318 hybrid contribution -0.028 0.732 -0.772 1.064 sum -0.496 3.054 12.334 12.716 Atomic orbital electron populations 1.22145 0.95287 1.02287 1.00816 1.20848 0.93078 0.93012 0.80394 0.94427 1.20927 1.46006 0.94937 0.95110 0.93312 1.25659 0.93040 1.03244 0.94598 1.69956 1.45226 1.38288 1.02551 0.86033 0.80197 0.80064 0.78657 1.19360 1.19163 1.17412 1.86638 1.75646 1.43802 1.21119 1.24041 0.73656 0.85730 0.86393 1.90577 1.50031 1.18012 1.85131 1.24172 1.00098 1.03577 0.89924 1.23697 0.87820 0.96051 0.94624 1.89886 1.43416 1.72087 1.23838 1.23638 0.92152 1.04147 0.82609 0.91882 0.93210 0.91709 0.91409 0.81800 0.85834 0.89571 0.90136 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.27 9.53 71.98 0.69 -5.58 15 2 C 0.18 8.82 2.22 29.85 0.07 8.89 15 3 H 0.04 1.91 4.31 -2.38 -0.01 1.90 15 4 C -0.53 -30.35 9.25 25.60 0.24 -30.11 15 5 H 0.05 3.06 8.06 -2.91 -0.02 3.03 15 6 C 0.04 2.03 5.47 84.66 0.46 2.49 15 7 N -0.92 -55.12 13.96 21.45 0.30 -54.82 15 8 Si 0.93 43.26 26.99 68.60 1.85 45.12 15 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 11 H -0.25 -11.17 6.82 99.48 0.68 -10.49 15 12 O -0.36 -15.75 9.86 -51.34 -0.51 -16.25 15 13 C 0.46 16.99 7.52 71.24 0.54 17.53 15 14 O -0.55 -22.80 15.20 21.95 0.33 -22.47 15 15 C -0.16 -4.08 4.76 -11.27 -0.05 -4.13 15 16 C 0.05 1.24 8.11 63.85 0.52 1.76 15 17 O -0.37 -9.30 12.74 -148.98 -1.90 -11.20 15 18 C 0.05 1.23 8.33 63.88 0.53 1.76 15 19 H 0.06 2.58 8.14 -2.39 -0.02 2.56 15 20 H 0.05 1.89 8.14 -2.38 -0.02 1.87 15 21 H 0.06 2.69 8.14 -2.39 -0.02 2.67 15 22 H 0.28 15.24 8.31 -92.71 -0.77 14.47 15 23 H 0.16 3.33 8.14 -2.39 -0.02 3.31 15 24 H 0.12 2.10 8.14 -2.39 -0.02 2.08 15 25 H 0.09 2.15 7.47 -2.39 -0.02 2.13 15 26 H 0.08 2.05 8.10 -2.39 -0.02 2.03 15 27 H 0.12 2.43 8.14 -2.39 -0.02 2.41 15 Total: -1.00 -65.96 240.07 4.20 -61.76 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.13 Total: 5.26 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 2.98 Total: -7.40 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.30 Total: -54.82 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -2.07 Total: -49.92 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.85 Total: 45.12 kcal Total: -65.96 4.20 -61.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308125373.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.930 kcal (2) G-P(sol) polarization free energy of solvation -65.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds