Wall clock time and date at job start Mon Mar 30 2020 02:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46577 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99800 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47234 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.50509 * 64.30086 * 12 11 10 14 14 C 1.54087 * 110.56509 * 187.03958 * 12 11 10 15 15 O 1.46042 * 103.84175 * 118.53178 * 14 12 11 16 16 C 1.33769 * 109.51169 * 0.11986 * 15 14 12 17 17 O 1.21514 * 123.07252 * 179.97438 * 16 15 14 18 18 N 1.34004 * 113.85700 * 359.91973 * 16 15 14 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 21 21 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 22 22 H 1.00898 * 110.99915 * 56.05080 * 10 9 7 23 23 H 1.09002 * 109.47091 * 300.00139 * 11 10 9 24 24 H 1.09001 * 109.46854 * 60.00166 * 11 10 9 25 25 H 1.08998 * 110.52639 * 237.20458 * 14 12 11 26 26 H 1.09008 * 110.52166 * 359.94334 * 14 12 11 27 27 H 0.96994 * 125.55792 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5303 -6.0430 -0.0019 13 1 3.1154 -6.0299 0.9177 14 6 1.8297 -7.4041 -0.1781 15 8 2.3834 -7.9231 -1.4258 16 6 3.2630 -7.0465 -1.9231 17 8 3.8717 -7.2326 -2.9582 18 7 3.4107 -5.9439 -1.1760 19 1 -0.4849 0.8400 0.0004 20 1 0.6248 -2.5571 0.8897 21 1 0.6240 -2.5567 -0.8903 22 1 2.8411 -3.5490 0.7792 23 1 0.8814 -4.9816 0.8895 24 1 0.8795 -4.9813 -0.8905 25 1 2.0683 -8.0673 0.6533 26 1 0.7512 -7.2704 -0.2641 27 1 4.0015 -5.2013 -1.3770 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388383003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:08 Heat of formation + Delta-G solvation = -77.213056 kcal Electronic energy + Delta-G solvation = -12578.071909 eV Core-core repulsion = 10142.970725 eV Total energy + Delta-G solvation = -2435.101184 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.41583 -37.14967 -36.07484 -34.09067 -32.38360 -30.06594 -27.16285 -24.57706 -22.24558 -21.78219 -21.41522 -18.01838 -17.06919 -16.78255 -16.09133 -15.16634 -14.74302 -14.19365 -14.11979 -13.77997 -13.43569 -13.35068 -12.33319 -11.96364 -11.46381 -11.38813 -10.82449 -10.79004 -10.65806 -10.50278 -10.03991 -9.39936 -9.10973 -8.57867 -7.55941 -6.12835 -4.15815 2.82042 2.91716 3.27948 3.32586 3.35199 3.65686 4.04508 4.36618 4.59083 4.84839 5.09714 5.23522 5.29838 5.36277 5.51979 5.83996 6.03579 7.01062 7.05510 7.23623 7.39671 7.63394 7.98352 8.16066 8.27798 8.41317 8.92122 9.49811 10.98156 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.064718 B = 0.006653 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.544515 B = 4207.806327 C = 4446.194666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.688 5.688 11 C 0.047 3.953 12 C 0.096 3.904 13 H 0.099 0.901 14 C 0.046 3.954 15 O -0.335 6.335 16 C 0.643 3.357 17 O -0.535 6.535 18 N -0.710 5.710 19 H 0.263 0.737 20 H -0.011 1.011 21 H 0.029 0.971 22 H 0.329 0.671 23 H 0.039 0.961 24 H 0.074 0.926 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 -11.194 3.886 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.318 5.318 11 C -0.084 4.084 12 C -0.010 4.010 13 H 0.116 0.884 14 C -0.030 4.030 15 O -0.246 6.246 16 C 0.395 3.605 17 O -0.422 6.422 18 N -0.382 5.382 19 H 0.073 0.927 20 H 0.007 0.993 21 H 0.047 0.953 22 H 0.146 0.854 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 2.699 -11.509 2.604 12.105 hybrid contribution 0.152 1.425 1.033 1.766 sum 2.851 -10.084 3.637 11.093 Atomic orbital electron populations 1.69941 1.06127 1.27105 1.50441 1.24987 0.94890 0.99464 0.95122 0.86514 0.79414 0.82506 0.78695 1.20084 1.21298 1.20237 1.21104 0.93476 0.90135 1.51021 0.91944 1.19565 0.90464 0.87111 0.95966 1.60673 1.21383 1.00921 1.48862 1.22332 0.94547 0.90255 1.01258 1.22469 0.92779 0.95174 0.90624 0.88350 1.24422 1.00169 0.93543 0.84868 1.87279 1.54976 1.43510 1.38794 1.18549 0.79039 0.79591 0.83356 1.91052 1.49634 1.78840 1.22626 1.45935 1.45931 1.21620 1.24708 0.92722 0.99338 0.95311 0.85417 0.94290 0.90779 0.87655 0.87462 0.71342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 13.29 55.43 0.74 -25.33 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.52 -14.03 9.32 -34.44 -0.32 -14.35 15 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 15 9 C 0.20 4.77 5.44 -4.97 -0.03 4.74 15 10 N -0.69 -12.78 6.33 -115.05 -0.73 -13.51 15 11 C 0.05 0.68 5.23 -3.82 -0.02 0.66 15 12 C 0.10 1.06 3.97 -67.04 -0.27 0.80 15 13 H 0.10 0.88 8.14 -51.93 -0.42 0.45 15 14 C 0.05 0.43 7.90 37.72 0.30 0.72 15 15 O -0.34 -4.70 11.10 -37.83 -0.42 -5.12 15 16 C 0.64 10.39 9.16 53.71 0.49 10.88 15 17 O -0.54 -10.75 18.04 -19.12 -0.34 -11.09 15 18 N -0.71 -9.72 5.89 -58.23 -0.34 -10.06 15 19 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 20 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 15 21 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.33 5.67 8.72 -39.29 -0.34 5.33 15 23 H 0.04 0.52 8.14 -51.93 -0.42 0.09 15 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.11 0.65 8.14 -51.93 -0.42 0.23 15 26 H 0.11 0.85 7.73 -51.92 -0.40 0.45 15 27 H 0.44 6.11 8.96 -40.82 -0.37 5.74 15 LS Contribution 242.37 15.07 3.65 3.65 Total: -1.00 -32.24 242.37 -5.60 -37.84 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -3.19 Total: 2.59 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 0.06 Total: 4.93 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.33 Total: -48.89 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.76 Total: -16.21 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.24 -5.60 -37.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388383003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.376 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds