Wall clock time and date at job start Mon Mar 30 2020 02:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46577 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99800 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47234 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.50509 * 64.30086 * 12 11 10 14 14 C 1.54087 * 110.56509 * 187.03958 * 12 11 10 15 15 O 1.46042 * 103.84175 * 118.53178 * 14 12 11 16 16 C 1.33769 * 109.51169 * 0.11986 * 15 14 12 17 17 O 1.21514 * 123.07252 * 179.97438 * 16 15 14 18 18 N 1.34004 * 113.85700 * 359.91973 * 16 15 14 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 21 21 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 22 22 H 1.00898 * 110.99915 * 56.05080 * 10 9 7 23 23 H 1.09002 * 109.47091 * 300.00139 * 11 10 9 24 24 H 1.09001 * 109.46854 * 60.00166 * 11 10 9 25 25 H 1.08998 * 110.52639 * 237.20458 * 14 12 11 26 26 H 1.09008 * 110.52166 * 359.94334 * 14 12 11 27 27 H 0.96994 * 125.55792 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9071 -0.0012 12 6 2.5303 -6.0430 -0.0019 13 1 3.1154 -6.0299 0.9177 14 6 1.8297 -7.4041 -0.1781 15 8 2.3834 -7.9231 -1.4258 16 6 3.2630 -7.0465 -1.9231 17 8 3.8717 -7.2326 -2.9582 18 7 3.4107 -5.9439 -1.1760 19 1 -0.4849 0.8400 0.0004 20 1 0.6248 -2.5571 0.8897 21 1 0.6240 -2.5567 -0.8903 22 1 2.8411 -3.5490 0.7792 23 1 0.8814 -4.9816 0.8895 24 1 0.8795 -4.9813 -0.8905 25 1 2.0683 -8.0673 0.6533 26 1 0.7512 -7.2704 -0.2641 27 1 4.0015 -5.2013 -1.3770 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388383003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:08 Heat of formation + Delta-G solvation = -104.535101 kcal Electronic energy + Delta-G solvation = -12579.256682 eV Core-core repulsion = 10142.970725 eV Total energy + Delta-G solvation = -2436.285956 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.50904 -38.45183 -37.43147 -35.57670 -34.21531 -31.29403 -28.79983 -26.00333 -23.68657 -23.05519 -22.80653 -19.13189 -18.62626 -18.08363 -17.49469 -16.68241 -16.46302 -15.47912 -15.32272 -15.04040 -14.87013 -14.45242 -14.04796 -13.41969 -13.16560 -12.79369 -12.59385 -12.47950 -12.00636 -11.84154 -11.67478 -11.33723 -10.65674 -10.28154 -9.13991 -8.22874 -6.33359 1.42603 1.45252 1.52929 1.64104 1.80592 2.39830 2.69324 3.10666 3.11992 3.66381 3.87639 4.02990 4.33372 4.44184 4.60347 4.74945 4.91723 5.09577 5.26988 5.60523 5.86827 6.01130 6.29579 6.40137 6.72387 6.90084 7.08205 7.37937 8.88267 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.064718 B = 0.006653 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.544515 B = 4207.806327 C = 4446.194666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.688 5.688 11 C 0.047 3.953 12 C 0.103 3.897 13 H 0.134 0.866 14 C 0.046 3.954 15 O -0.346 6.346 16 C 0.641 3.359 17 O -0.586 6.586 18 N -0.706 5.706 19 H 0.264 0.736 20 H -0.030 1.030 21 H -0.005 1.005 22 H 0.341 0.659 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.149 0.851 26 H 0.123 0.877 27 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -11.552 5.268 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.319 5.319 11 C -0.083 4.083 12 C -0.002 4.002 13 H 0.152 0.848 14 C -0.028 4.028 15 O -0.256 6.256 16 C 0.394 3.606 17 O -0.475 6.475 18 N -0.376 5.376 19 H 0.073 0.927 20 H -0.013 1.013 21 H 0.013 0.987 22 H 0.159 0.841 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.167 0.833 26 H 0.141 0.859 27 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 3.413 -11.888 4.030 13.008 hybrid contribution -0.133 1.485 0.656 1.629 sum 3.280 -10.403 4.686 11.872 Atomic orbital electron populations 1.70068 1.07767 1.28022 1.51584 1.25905 0.95712 1.03294 0.94709 0.85431 0.78107 0.77923 0.79107 1.19684 1.21148 1.18876 1.21542 0.93928 0.91442 1.50457 0.91499 1.19174 0.90600 0.88712 0.93386 1.60443 1.20595 1.01165 1.49675 1.22397 0.95439 0.89203 1.01309 1.22629 0.91969 0.94695 0.90914 0.84821 1.24860 1.00751 0.92973 0.84253 1.87256 1.54385 1.43272 1.40684 1.18657 0.78916 0.80114 0.82931 1.91003 1.51697 1.79994 1.24851 1.46005 1.45709 1.20799 1.25098 0.92682 1.01279 0.98688 0.84104 0.92319 0.92599 0.83305 0.85925 0.71556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 13.29 21.45 0.28 -54.57 15 2 C 0.00 0.12 5.46 84.66 0.46 0.58 15 3 Si 0.97 42.95 29.54 68.60 2.03 44.97 15 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 15 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 15 7 C -0.54 -28.89 9.32 25.60 0.24 -28.65 15 8 H 0.07 3.47 7.81 -2.91 -0.02 3.44 15 9 C 0.21 10.31 5.44 85.56 0.47 10.77 15 10 N -0.69 -24.78 6.33 -517.90 -3.28 -28.05 15 11 C 0.05 1.26 5.23 86.30 0.45 1.71 15 12 C 0.10 1.96 3.97 45.25 0.18 2.14 15 13 H 0.13 1.72 8.14 -2.39 -0.02 1.71 15 14 C 0.05 0.68 7.90 72.35 0.57 1.25 15 15 O -0.35 -9.03 11.10 -47.30 -0.52 -9.55 15 16 C 0.64 20.19 9.16 129.91 1.19 21.38 15 17 O -0.59 -23.78 18.04 19.64 0.35 -23.42 15 18 N -0.71 -18.20 5.89 -569.86 -3.36 -21.56 15 19 H 0.26 14.68 8.31 -92.71 -0.77 13.91 15 20 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 15 21 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 15 22 H 0.34 11.04 8.72 -89.70 -0.78 10.26 15 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.15 1.03 8.14 -2.39 -0.02 1.01 15 26 H 0.12 1.50 7.73 -2.38 -0.02 1.48 15 27 H 0.44 11.69 8.96 -92.71 -0.83 10.86 15 Total: -1.00 -71.06 242.37 -1.36 -72.42 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -0.42 Total: 10.58 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 3.56 Total: 9.19 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -6.35 Total: -104.18 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.17 Total: -32.98 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -71.06 -1.36 -72.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388383003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.118 kcal (2) G-P(sol) polarization free energy of solvation -71.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds