Wall clock time and date at job start Mon Mar 30 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00100 * 2 1 4 4 H 1.48501 * 109.47085 * 269.99839 * 3 2 1 5 5 H 1.48489 * 109.47179 * 29.99933 * 3 2 1 6 6 H 1.48500 * 109.46914 * 150.00312 * 3 2 1 7 7 C 1.37883 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00237 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00012 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47341 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00267 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47271 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.62137 * 297.81998 * 12 11 10 14 14 C 1.54096 * 110.56593 * 174.99925 * 12 11 10 15 15 O 1.45694 * 104.00881 * 241.42888 * 14 12 11 16 16 C 1.33774 * 109.48005 * 359.97438 * 15 14 12 17 17 O 1.21509 * 123.07640 * 180.02562 * 16 15 14 18 18 N 1.34015 * 113.85206 * 0.02562 * 16 15 14 19 19 H 0.96998 * 120.00438 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47109 * 59.99967 * 9 7 2 21 21 H 1.08998 * 109.47443 * 300.00023 * 9 7 2 22 22 H 1.00907 * 110.99441 * 303.95619 * 10 9 7 23 23 H 1.09001 * 109.47412 * 59.99888 * 11 10 9 24 24 H 1.08999 * 109.47292 * 300.00252 * 11 10 9 25 25 H 1.09002 * 110.51795 * 0.06059 * 14 12 11 26 26 H 1.08997 * 110.52006 * 122.65759 * 14 12 11 27 27 H 0.96996 * 125.55623 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0012 -2.5791 0.0001 11 6 5.4696 -2.6184 0.0001 12 6 5.9409 -4.0739 0.0009 13 1 5.6062 -4.5854 0.9034 14 6 7.4750 -4.1462 -0.1248 15 8 7.6931 -4.8718 -1.3692 16 6 6.5129 -5.1902 -1.9127 17 8 6.4073 -5.8006 -2.9581 18 7 5.4577 -4.7744 -1.1988 19 1 -0.4851 0.8400 -0.0004 20 1 3.8752 -0.6797 0.8895 21 1 3.8746 -0.6810 -0.8905 22 1 3.6259 -3.0952 0.7818 23 1 5.8465 -2.1143 0.8901 24 1 5.8466 -2.1145 -0.8898 25 1 7.9009 -3.1448 -0.1867 26 1 7.9021 -4.6907 0.7173 27 1 4.5272 -4.9133 -1.4346 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388383004.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:13 Heat of formation + Delta-G solvation = -72.745715 kcal Electronic energy + Delta-G solvation = -12612.480977 eV Core-core repulsion = 10177.573512 eV Total energy + Delta-G solvation = -2434.907465 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50302 -37.22477 -36.21449 -34.18742 -32.39860 -30.24983 -27.65489 -24.68110 -22.23893 -21.84645 -21.20636 -18.07560 -17.20966 -16.95556 -16.35576 -15.32950 -14.65357 -14.25538 -14.16660 -13.92125 -13.57969 -13.39153 -12.53903 -12.25266 -11.70319 -11.68937 -10.81815 -10.76281 -10.62230 -10.51530 -9.98106 -9.46136 -9.20334 -8.69147 -7.75262 -6.15664 -4.15121 2.77100 2.85487 3.21532 3.28950 3.29326 3.59830 3.96179 4.32538 4.50249 4.76578 5.00471 5.15831 5.19399 5.22763 5.42608 5.69385 5.89433 6.58284 6.83608 6.96859 7.33273 7.42892 7.67254 8.07109 8.22393 8.50023 8.91024 9.45097 10.97398 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.061252 B = 0.007073 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.020204 B = 3957.881676 C = 4139.962424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.521 4.521 8 H 0.080 0.920 9 C 0.165 3.835 10 N -0.679 5.679 11 C 0.045 3.955 12 C 0.097 3.903 13 H 0.101 0.899 14 C 0.045 3.955 15 O -0.334 6.334 16 C 0.642 3.358 17 O -0.533 6.533 18 N -0.711 5.711 19 H 0.265 0.735 20 H -0.013 1.013 21 H 0.023 0.977 22 H 0.337 0.663 23 H 0.040 0.960 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.434 -5.220 3.912 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.559 4.559 8 H 0.098 0.902 9 C 0.038 3.962 10 N -0.309 5.309 11 C -0.087 4.087 12 C -0.010 4.010 13 H 0.119 0.881 14 C -0.031 4.031 15 O -0.244 6.244 16 C 0.394 3.606 17 O -0.419 6.419 18 N -0.383 5.383 19 H 0.075 0.925 20 H 0.004 0.996 21 H 0.041 0.959 22 H 0.154 0.846 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 13.566 -5.495 2.642 14.873 hybrid contribution 0.015 1.363 0.992 1.686 sum 13.581 -4.131 3.634 14.653 Atomic orbital electron populations 1.69888 1.06192 1.27053 1.50443 1.24908 0.94762 0.99009 0.94568 0.86811 0.80129 0.83804 0.78652 1.20091 1.21133 1.19335 1.21009 0.88744 0.94892 1.51258 0.90239 1.20006 0.96862 0.84378 0.94959 1.60464 1.03439 1.17579 1.49459 1.22377 0.92208 0.92801 1.01275 1.22451 0.92866 0.95411 0.90241 0.88146 1.24350 0.94978 0.98574 0.85175 1.87233 1.29182 1.70349 1.37664 1.18558 0.79786 0.78764 0.83453 1.91058 1.84584 1.44684 1.21600 1.45959 1.09660 1.58529 1.24171 0.92503 0.99561 0.95902 0.84576 0.94192 0.90698 0.87584 0.87610 0.71224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.96 55.43 0.77 -26.11 15 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 15 3 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.27 -6.05 6.54 56.52 0.37 -5.68 15 7 C -0.52 -14.20 9.87 -34.44 -0.34 -14.54 15 8 H 0.08 2.35 8.06 -52.49 -0.42 1.93 15 9 C 0.17 3.70 4.51 -4.98 -0.02 3.68 15 10 N -0.68 -11.99 6.37 -115.06 -0.73 -12.73 15 11 C 0.04 0.59 5.21 -3.83 -0.02 0.57 15 12 C 0.10 1.01 3.97 -67.04 -0.27 0.74 15 13 H 0.10 0.84 8.14 -51.93 -0.42 0.41 15 14 C 0.04 0.39 7.88 37.73 0.30 0.69 15 15 O -0.33 -4.49 11.09 -37.84 -0.42 -4.91 15 16 C 0.64 10.05 9.16 53.72 0.49 10.54 15 17 O -0.53 -10.49 18.04 -19.11 -0.34 -10.83 15 18 N -0.71 -9.38 5.93 -58.22 -0.35 -9.72 15 19 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 20 H -0.01 -0.29 7.20 -51.93 -0.37 -0.67 15 21 H 0.02 0.53 7.57 -51.93 -0.39 0.14 15 22 H 0.34 5.60 8.72 -39.29 -0.34 5.25 15 23 H 0.04 0.47 8.14 -51.93 -0.42 0.05 15 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.11 0.75 7.73 -51.93 -0.40 0.35 15 26 H 0.11 0.60 8.14 -51.93 -0.42 0.17 15 27 H 0.44 5.97 8.96 -40.82 -0.37 5.60 15 LS Contribution 238.80 15.07 3.60 3.60 Total: -1.00 -32.86 238.80 -5.25 -38.11 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -3.16 Total: 2.89 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 0.04 Total: 3.55 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.31 Total: -48.56 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.76 Total: -15.74 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.86 -5.25 -38.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388383004.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.632 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds