Wall clock time and date at job start Mon Mar 30 2020 02:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00100 * 2 1 4 4 H 1.48501 * 109.47085 * 269.99839 * 3 2 1 5 5 H 1.48489 * 109.47179 * 29.99933 * 3 2 1 6 6 H 1.48500 * 109.46914 * 150.00312 * 3 2 1 7 7 C 1.37883 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00237 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00012 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47341 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00267 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47271 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.62137 * 297.81998 * 12 11 10 14 14 C 1.54096 * 110.56593 * 174.99925 * 12 11 10 15 15 O 1.45694 * 104.00881 * 241.42888 * 14 12 11 16 16 C 1.33774 * 109.48005 * 359.97438 * 15 14 12 17 17 O 1.21509 * 123.07640 * 180.02562 * 16 15 14 18 18 N 1.34015 * 113.85206 * 0.02562 * 16 15 14 19 19 H 0.96998 * 120.00438 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47109 * 59.99967 * 9 7 2 21 21 H 1.08998 * 109.47443 * 300.00023 * 9 7 2 22 22 H 1.00907 * 110.99441 * 303.95619 * 10 9 7 23 23 H 1.09001 * 109.47412 * 59.99888 * 11 10 9 24 24 H 1.08999 * 109.47292 * 300.00252 * 11 10 9 25 25 H 1.09002 * 110.51795 * 0.06059 * 14 12 11 26 26 H 1.08997 * 110.52006 * 122.65759 * 14 12 11 27 27 H 0.96996 * 125.55623 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0012 -2.5791 0.0001 11 6 5.4696 -2.6184 0.0001 12 6 5.9409 -4.0739 0.0009 13 1 5.6062 -4.5854 0.9034 14 6 7.4750 -4.1462 -0.1248 15 8 7.6931 -4.8718 -1.3692 16 6 6.5129 -5.1902 -1.9127 17 8 6.4073 -5.8006 -2.9581 18 7 5.4577 -4.7744 -1.1988 19 1 -0.4851 0.8400 -0.0004 20 1 3.8752 -0.6797 0.8895 21 1 3.8746 -0.6810 -0.8905 22 1 3.6259 -3.0952 0.7818 23 1 5.8465 -2.1143 0.8901 24 1 5.8466 -2.1145 -0.8898 25 1 7.9009 -3.1448 -0.1867 26 1 7.9021 -4.6907 0.7173 27 1 4.5272 -4.9133 -1.4346 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388383004.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:10 Heat of formation + Delta-G solvation = -101.542806 kcal Electronic energy + Delta-G solvation = -12613.729713 eV Core-core repulsion = 10177.573512 eV Total energy + Delta-G solvation = -2436.156201 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.53294 -38.46907 -37.47734 -35.56427 -34.28414 -31.45251 -29.19231 -25.94208 -23.46845 -22.89985 -22.82812 -19.17267 -18.94599 -18.08779 -17.59118 -16.68449 -16.30983 -15.55576 -15.38472 -15.08817 -14.92782 -14.40731 -14.34388 -13.62624 -13.24511 -12.84432 -12.48919 -12.31502 -11.85774 -11.83555 -11.65968 -11.49077 -10.81025 -10.29191 -9.15522 -8.29760 -6.34535 1.36688 1.37649 1.47796 1.64422 1.79758 2.34188 2.70246 3.05044 3.07879 3.66328 3.87249 3.98481 4.33941 4.44335 4.60124 4.72369 4.82275 4.93529 5.08414 5.52985 5.85347 5.90671 6.30301 6.52332 6.66357 6.78066 7.07176 7.30851 8.86859 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.061252 B = 0.007073 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.020204 B = 3957.881676 C = 4139.962424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.528 4.528 8 H 0.039 0.961 9 C 0.175 3.825 10 N -0.690 5.690 11 C 0.045 3.955 12 C 0.101 3.899 13 H 0.131 0.869 14 C 0.045 3.955 15 O -0.345 6.345 16 C 0.641 3.359 17 O -0.586 6.586 18 N -0.708 5.708 19 H 0.267 0.733 20 H -0.004 1.004 21 H 0.019 0.981 22 H 0.343 0.657 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.127 0.873 26 H 0.146 0.854 27 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.831 -4.391 5.309 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.566 4.566 8 H 0.057 0.943 9 C 0.047 3.953 10 N -0.321 5.321 11 C -0.085 4.085 12 C -0.005 4.005 13 H 0.148 0.852 14 C -0.029 4.029 15 O -0.255 6.255 16 C 0.394 3.606 17 O -0.476 6.476 18 N -0.379 5.379 19 H 0.076 0.924 20 H 0.014 0.986 21 H 0.037 0.963 22 H 0.161 0.839 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.145 0.855 26 H 0.164 0.836 27 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 16.000 -4.669 4.085 17.161 hybrid contribution -0.749 1.044 0.615 1.424 sum 15.251 -3.626 4.700 16.366 Atomic orbital electron populations 1.70054 1.08312 1.28199 1.52403 1.25904 0.95593 1.03425 0.94254 0.85652 0.79532 0.78356 0.78952 1.19724 1.21005 1.16651 1.21374 0.91629 0.93372 1.50273 0.94302 1.19724 0.93459 0.87172 0.94965 1.60267 1.06668 1.14938 1.50235 1.22460 0.89048 0.94955 1.02060 1.22661 0.94189 0.93558 0.90071 0.85160 1.24799 0.93603 1.00066 0.84424 1.87209 1.28040 1.70655 1.39550 1.18665 0.80616 0.78323 0.83009 1.91007 1.85526 1.47077 1.23982 1.46049 1.09101 1.57954 1.24748 0.92447 0.98594 0.96255 0.83903 0.91386 0.91706 0.85509 0.83585 0.71657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.15 13.96 21.45 0.30 -57.85 15 2 C 0.01 0.32 5.47 84.66 0.46 0.78 15 3 Si 0.95 42.23 27.47 68.60 1.88 44.12 15 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 6 H -0.24 -9.70 6.54 99.48 0.65 -9.05 15 7 C -0.53 -29.01 9.87 25.60 0.25 -28.76 15 8 H 0.04 2.38 8.06 -2.91 -0.02 2.35 15 9 C 0.18 7.53 4.51 85.56 0.39 7.92 15 10 N -0.69 -23.02 6.37 -517.95 -3.30 -26.32 15 11 C 0.05 1.02 5.21 86.30 0.45 1.47 15 12 C 0.10 1.72 3.97 45.25 0.18 1.90 15 13 H 0.13 1.55 8.14 -2.39 -0.02 1.53 15 14 C 0.05 0.58 7.88 72.35 0.57 1.15 15 15 O -0.34 -8.46 11.09 -47.35 -0.52 -8.98 15 16 C 0.64 19.48 9.16 129.91 1.19 20.67 15 17 O -0.59 -23.38 18.04 19.66 0.35 -23.03 15 18 N -0.71 -17.56 5.93 -569.83 -3.38 -20.94 15 19 H 0.27 15.25 8.31 -92.71 -0.77 14.48 15 20 H 0.00 -0.15 7.20 -2.39 -0.02 -0.16 15 21 H 0.02 0.85 7.57 -2.39 -0.02 0.83 15 22 H 0.34 10.76 8.72 -89.69 -0.78 9.97 15 23 H 0.07 1.25 8.14 -2.39 -0.02 1.23 15 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.13 1.16 7.73 -2.39 -0.02 1.14 15 26 H 0.15 0.80 8.14 -2.39 -0.02 0.78 15 27 H 0.44 11.57 8.96 -92.71 -0.83 10.74 15 Total: -1.00 -73.66 238.80 -1.65 -75.31 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -0.47 Total: 12.56 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 3.49 Total: 5.13 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -6.38 Total: -105.11 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.17 Total: -32.01 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.12 kcal Total: -73.66 -1.65 -75.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388383004.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.236 kcal (2) G-P(sol) polarization free energy of solvation -73.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds