Wall clock time and date at job start Mon Mar 30 2020 03:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48503 * 109.47219 * 240.00206 * 3 2 1 5 5 H 1.48505 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47127 * 120.00058 * 3 2 1 7 7 C 1.37874 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99609 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00460 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99765 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47049 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.46892 * 65.00124 * 12 11 10 14 14 C 1.42902 * 113.99903 * 180.02562 * 13 12 11 15 15 C 1.53786 * 113.61284 * 209.99760 * 14 13 12 16 16 C 1.53781 * 87.17350 * 220.06071 * 15 14 13 17 17 C 1.53782 * 87.08260 * 25.39213 * 16 15 14 18 18 H 0.97004 * 119.99828 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.47081 * 60.00033 * 9 7 2 20 20 H 1.09004 * 109.46450 * 300.00031 * 9 7 2 21 21 H 1.08997 * 109.47065 * 60.00306 * 11 10 9 22 22 H 1.09002 * 109.47322 * 299.99493 * 11 10 9 23 23 H 1.08998 * 109.46970 * 305.00742 * 12 11 10 24 24 H 1.08997 * 109.47169 * 185.00066 * 12 11 10 25 25 H 1.08993 * 112.90736 * 341.24804 * 14 13 12 26 26 H 1.09002 * 113.61357 * 105.46987 * 15 14 13 27 27 H 1.09002 * 113.61608 * 334.65149 * 15 14 13 28 28 H 1.09001 * 113.61695 * 139.93969 * 16 15 14 29 29 H 1.08997 * 113.61223 * 270.84552 * 16 15 14 30 30 H 1.08997 * 113.61668 * 89.11298 * 17 16 15 31 31 H 1.08998 * 113.61674 * 219.93807 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9562 -0.0006 13 8 3.3883 -5.8896 1.2199 14 6 4.4307 -6.8617 1.3212 15 6 4.7251 -7.3010 2.7653 16 6 6.2155 -7.2810 2.3869 17 6 5.8456 -6.2550 1.3027 18 1 -0.4850 0.8401 -0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5570 0.8897 21 1 0.9447 -4.9827 -0.8897 22 1 0.9453 -4.9822 0.8903 23 1 3.3211 -5.7957 -0.8429 24 1 2.1820 -6.9375 -0.0898 25 1 4.3035 -7.6940 0.6290 26 1 4.3486 -8.2956 3.0045 27 1 4.4543 -6.5550 3.5125 28 1 6.8591 -6.8774 3.1685 29 1 6.5770 -8.2281 1.9865 30 1 5.8808 -5.2220 1.6489 31 1 6.3748 -6.4042 0.3616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395363754.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:02 Heat of formation + Delta-G solvation = -82.548833 kcal Electronic energy + Delta-G solvation = -12617.107000 eV Core-core repulsion = 10285.314784 eV Total energy + Delta-G solvation = -2331.792217 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.09989 -36.90071 -35.41861 -32.66807 -29.49468 -26.78877 -25.59918 -24.52857 -22.36980 -21.85875 -19.57398 -17.06622 -16.38101 -15.83679 -15.43761 -14.81034 -14.60609 -13.96028 -13.91222 -13.20499 -12.38161 -12.34822 -12.01327 -11.69808 -11.28518 -11.15842 -10.84618 -10.75720 -10.62652 -10.42649 -10.32577 -9.94581 -9.18898 -9.05042 -8.77880 -8.12064 -6.06570 -4.07850 3.35624 3.37670 3.42135 3.96046 4.38495 4.61892 4.67965 4.85910 4.87816 4.99384 5.27942 5.29724 5.52619 5.64848 5.65737 5.81830 5.85696 5.98795 6.02858 6.06372 6.22730 6.26394 6.38539 7.14385 7.47716 7.56839 7.84137 8.20239 8.63546 9.05517 9.56658 11.05094 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.047311 B = 0.006384 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.686506 B = 4385.184707 C = 4796.538342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.063 3.937 12 C 0.067 3.933 13 O -0.360 6.360 14 C 0.059 3.941 15 C -0.138 4.138 16 C -0.143 4.143 17 C -0.156 4.156 18 H 0.264 0.736 19 H 0.004 0.996 20 H 0.006 0.994 21 H 0.051 0.949 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.667 -14.198 2.019 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.308 6.308 11 C -0.015 4.015 12 C -0.010 4.010 13 O -0.279 6.279 14 C 0.000 4.000 15 C -0.175 4.175 16 C -0.180 4.180 17 C -0.194 4.194 18 H 0.074 0.926 19 H 0.022 0.978 20 H 0.023 0.977 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.661 -13.899 2.161 16.017 hybrid contribution 0.035 0.645 -0.259 0.695 sum 7.695 -13.255 1.903 15.444 Atomic orbital electron populations 1.69960 1.06099 1.27201 1.50677 1.24947 0.94979 0.99401 0.95189 0.86388 0.79300 0.81892 0.78839 1.20039 1.21160 1.20001 1.21030 0.94056 0.89386 1.50685 0.91601 1.20205 0.88812 0.83693 0.95324 1.87915 1.35135 1.12639 1.95150 1.22264 0.93767 0.85706 0.99735 1.22610 0.93936 0.97027 0.87402 1.88102 1.46791 1.54944 1.38013 1.23702 0.87523 0.91455 0.97280 1.23202 0.95645 1.01555 0.97119 1.22654 0.96479 0.99502 0.99379 1.23503 0.96480 1.00373 0.99067 0.92645 0.97789 0.97662 0.93102 0.93714 0.92845 0.92938 0.90110 0.91433 0.89075 0.90948 0.90353 0.88869 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 22.34 29.54 -169.99 -5.02 17.31 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -15.66 9.43 -34.44 -0.32 -15.99 16 8 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 9 C 0.19 5.55 5.69 36.00 0.20 5.76 16 10 O -0.39 -10.01 10.29 -40.09 -0.41 -10.42 16 11 C 0.06 1.24 6.32 37.16 0.23 1.48 16 12 C 0.07 1.09 6.16 37.16 0.23 1.32 16 13 O -0.36 -6.39 10.32 -40.09 -0.41 -6.80 16 14 C 0.06 0.78 4.32 -25.82 -0.11 0.67 16 15 C -0.14 -1.58 7.91 -25.92 -0.20 -1.79 16 16 C -0.14 -1.44 8.08 -25.92 -0.21 -1.65 16 17 C -0.16 -1.97 7.92 -25.82 -0.20 -2.17 16 18 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 19 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 20 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 21 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 267.75 15.07 4.03 4.03 Total: -1.00 -32.69 267.75 -6.59 -39.27 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -5.03 Total: -5.82 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.48 Total: -10.81 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.83 Total: -17.22 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.69 -6.59 -39.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395363754.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.277 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds