Wall clock time and date at job start Mon Mar 30 2020 03:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48503 * 109.47219 * 240.00206 * 3 2 1 5 5 H 1.48505 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47127 * 120.00058 * 3 2 1 7 7 C 1.37874 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99609 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00460 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99765 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47049 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.46892 * 65.00124 * 12 11 10 14 14 C 1.42902 * 113.99903 * 180.02562 * 13 12 11 15 15 C 1.53786 * 113.61284 * 209.99760 * 14 13 12 16 16 C 1.53781 * 87.17350 * 220.06071 * 15 14 13 17 17 C 1.53782 * 87.08260 * 25.39213 * 16 15 14 18 18 H 0.97004 * 119.99828 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.47081 * 60.00033 * 9 7 2 20 20 H 1.09004 * 109.46450 * 300.00031 * 9 7 2 21 21 H 1.08997 * 109.47065 * 60.00306 * 11 10 9 22 22 H 1.09002 * 109.47322 * 299.99493 * 11 10 9 23 23 H 1.08998 * 109.46970 * 305.00742 * 12 11 10 24 24 H 1.08997 * 109.47169 * 185.00066 * 12 11 10 25 25 H 1.08993 * 112.90736 * 341.24804 * 14 13 12 26 26 H 1.09002 * 113.61357 * 105.46987 * 15 14 13 27 27 H 1.09002 * 113.61608 * 334.65149 * 15 14 13 28 28 H 1.09001 * 113.61695 * 139.93969 * 16 15 14 29 29 H 1.08997 * 113.61223 * 270.84552 * 16 15 14 30 30 H 1.08997 * 113.61668 * 89.11298 * 17 16 15 31 31 H 1.08998 * 113.61674 * 219.93807 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9562 -0.0006 13 8 3.3883 -5.8896 1.2199 14 6 4.4307 -6.8617 1.3212 15 6 4.7251 -7.3010 2.7653 16 6 6.2155 -7.2810 2.3869 17 6 5.8456 -6.2550 1.3027 18 1 -0.4850 0.8401 -0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5570 0.8897 21 1 0.9447 -4.9827 -0.8897 22 1 0.9453 -4.9822 0.8903 23 1 3.3211 -5.7957 -0.8429 24 1 2.1820 -6.9375 -0.0898 25 1 4.3035 -7.6940 0.6290 26 1 4.3486 -8.2956 3.0045 27 1 4.4543 -6.5550 3.5125 28 1 6.8591 -6.8774 3.1685 29 1 6.5770 -8.2281 1.9865 30 1 5.8808 -5.2220 1.6489 31 1 6.3748 -6.4042 0.3616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395363754.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:00 Heat of formation + Delta-G solvation = -104.484162 kcal Electronic energy + Delta-G solvation = -12618.058188 eV Core-core repulsion = 10285.314784 eV Total energy + Delta-G solvation = -2332.743404 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = -0.10 seconds Orbital eigenvalues (eV) -40.16579 -38.65507 -36.77379 -34.91635 -31.13391 -28.91093 -26.53899 -25.50811 -24.55971 -23.38625 -20.52279 -18.67532 -18.23601 -17.59836 -16.59653 -16.47885 -16.31921 -15.52875 -15.41930 -14.80251 -13.92895 -13.58338 -13.36026 -13.21265 -12.96089 -12.72947 -12.67716 -12.32088 -12.15183 -11.68611 -11.58559 -11.32087 -11.25845 -10.89241 -10.31129 -10.25903 -8.33576 -6.46479 1.38645 1.44056 1.52533 2.34006 2.81142 2.99796 3.16924 3.70468 3.75500 3.95161 3.99081 4.17610 4.26415 4.45262 4.54598 4.60722 4.75243 4.82957 4.86801 4.87673 5.04518 5.05412 5.14956 5.26499 5.44434 5.52535 5.93904 6.41384 6.52987 6.79888 7.25427 8.78732 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.047311 B = 0.006384 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.686506 B = 4385.184707 C = 4796.538342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.207 3.793 10 O -0.408 6.408 11 C 0.049 3.951 12 C 0.072 3.928 13 O -0.398 6.398 14 C 0.045 3.955 15 C -0.138 4.138 16 C -0.126 4.126 17 C -0.167 4.167 18 H 0.272 0.728 19 H -0.009 1.009 20 H -0.017 1.017 21 H 0.070 0.930 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.745 -14.874 1.835 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.590 4.590 8 H 0.077 0.923 9 C 0.132 3.868 10 O -0.328 6.328 11 C -0.027 4.027 12 C -0.004 4.004 13 O -0.318 6.318 14 C -0.012 4.012 15 C -0.176 4.176 16 C -0.163 4.163 17 C -0.205 4.205 18 H 0.081 0.919 19 H 0.009 0.991 20 H 0.001 0.999 21 H 0.088 0.912 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.114 0.886 25 H 0.126 0.874 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.740 -14.607 1.978 17.137 hybrid contribution -0.335 0.759 -0.195 0.852 sum 8.405 -13.848 1.782 16.297 Atomic orbital electron populations 1.70064 1.07747 1.28803 1.50283 1.25982 0.96017 1.03406 0.93737 0.85215 0.78120 0.76567 0.79376 1.18862 1.19624 1.19190 1.21359 0.94025 0.90980 1.52652 0.92293 1.19850 0.88649 0.84737 0.93518 1.87867 1.35416 1.14334 1.95215 1.22682 0.95602 0.83992 1.00472 1.22623 0.93193 0.97375 0.87193 1.88056 1.48193 1.57005 1.38556 1.24126 0.86422 0.91502 0.99133 1.23202 0.96831 1.02017 0.95550 1.22647 0.95619 0.99700 0.98334 1.23519 0.96843 0.99541 1.00579 0.91928 0.99134 0.99892 0.91239 0.94029 0.92651 0.88608 0.87370 0.89244 0.91083 0.90380 0.87699 0.91814 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 2 C 0.01 0.42 5.46 84.65 0.46 0.89 16 3 Si 0.98 45.54 29.54 68.60 2.03 47.57 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.55 -34.47 9.43 25.60 0.24 -34.23 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 9 C 0.21 12.30 5.69 71.23 0.41 12.71 16 10 O -0.41 -21.61 10.29 -144.34 -1.49 -23.09 16 11 C 0.05 1.96 6.32 71.98 0.45 2.41 16 12 C 0.07 2.26 6.16 71.98 0.44 2.71 16 13 O -0.40 -13.99 10.32 -144.34 -1.49 -15.48 16 14 C 0.05 1.14 4.32 31.18 0.13 1.28 16 15 C -0.14 -2.95 7.91 31.12 0.25 -2.71 16 16 C -0.13 -2.24 8.08 31.12 0.25 -1.99 16 17 C -0.17 -4.05 7.92 31.18 0.25 -3.81 16 18 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 19 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 20 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 21 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 22 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 23 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.11 2.09 7.87 -2.39 -0.02 2.07 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -71.33 267.75 3.30 -68.03 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: 1.08 Total: 2.65 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 2.89 Total: -22.75 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.28 Total: -56.93 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -2.98 Total: -38.58 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.33 3.30 -68.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395363754.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.451 kcal (2) G-P(sol) polarization free energy of solvation -71.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.10 seconds