Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.50694 * 109.47754 * 59.97571 * 9 7 2 11 11 O 1.20826 * 120.00092 * 95.00294 * 10 9 7 12 12 O 1.34231 * 119.99910 * 275.00244 * 10 9 7 13 13 C 1.53094 * 109.47966 * 179.97438 * 9 7 2 14 14 C 1.53183 * 109.16195 * 62.37935 * 13 9 7 15 15 C 1.53175 * 109.03919 * 56.97646 * 14 13 9 16 16 C 1.53100 * 109.16330 * 303.01985 * 15 14 13 17 17 O 1.42903 * 109.41454 * 57.61062 * 16 15 14 18 18 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 19 19 H 0.96701 * 116.99911 * 180.02562 * 12 10 9 20 20 H 1.08997 * 109.51759 * 182.27629 * 13 9 7 21 21 H 1.08989 * 109.52514 * 302.40344 * 13 9 7 22 22 H 1.08993 * 109.54257 * 176.84495 * 14 13 9 23 23 H 1.09003 * 109.53723 * 297.10955 * 14 13 9 24 24 H 1.09000 * 109.52637 * 62.92304 * 15 14 13 25 25 H 1.09000 * 109.52275 * 183.11742 * 15 14 13 26 26 H 1.08995 * 109.48185 * 177.59312 * 16 15 14 27 27 H 1.09001 * 109.47841 * 297.62960 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0146 -0.4770 1.2314 11 8 4.3025 -1.1049 2.2227 12 8 4.1428 0.8591 1.2224 13 6 4.0222 -2.6372 0.0126 14 6 3.5569 -3.3418 -1.2656 15 6 4.0572 -2.5545 -2.4805 16 6 3.5452 -1.1144 -2.3918 17 8 3.9877 -0.5276 -1.1662 18 1 -0.4850 0.8400 0.0004 19 1 4.4696 1.2743 2.0323 20 1 5.1114 -2.6380 0.0529 21 1 3.6251 -3.1595 0.8828 22 1 3.9637 -4.3526 -1.2934 23 1 2.4679 -3.3850 -1.2822 24 1 5.1471 -2.5536 -2.4905 25 1 3.6840 -3.0180 -3.3938 26 1 3.9334 -0.5382 -3.2316 27 1 2.4556 -1.1134 -2.4226 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575461045.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -131.990773 kcal Electronic energy + Delta-G solvation = -14022.434195 eV Core-core repulsion = 11552.664920 eV Total energy + Delta-G solvation = -2469.769275 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.87660 -37.96588 -35.47564 -32.84486 -32.66708 -30.69750 -26.38693 -23.79992 -23.34471 -20.82298 -18.97752 -17.46892 -17.16854 -16.48442 -15.31816 -14.88496 -14.13370 -13.85020 -13.60807 -13.34806 -12.54737 -12.37065 -11.99624 -11.79962 -11.32700 -10.65714 -10.48913 -10.35364 -10.15413 -10.04844 -9.77323 -9.00467 -8.99088 -8.68548 -8.07730 -6.31151 -4.49112 3.08514 3.31642 3.50856 3.77566 4.21189 4.49231 4.84989 5.20791 5.55170 5.64953 5.65980 5.93349 6.14696 6.24650 6.28923 6.48454 6.65403 6.71825 6.78338 6.91682 6.97542 7.21057 7.30918 7.96774 8.32745 8.62151 8.79736 9.25233 10.74372 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.032589 B = 0.021450 C = 0.017610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.968322 B = 1305.065328 C = 1589.628347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.077 3.923 3 Si 0.921 3.079 4 H -0.295 1.295 5 H -0.216 1.216 6 H -0.315 1.315 7 C -0.548 4.548 8 H 0.090 0.910 9 C 0.217 3.783 10 C 0.492 3.508 11 O -0.533 6.533 12 O -0.495 6.495 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.149 4.149 16 C 0.069 3.931 17 O -0.384 6.384 18 H 0.270 0.730 19 H 0.381 0.619 20 H 0.050 0.950 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 -0.959 -3.242 7.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.130 4.130 3 Si 0.758 3.242 4 H -0.225 1.225 5 H -0.141 1.141 6 H -0.246 1.246 7 C -0.584 4.584 8 H 0.108 0.892 9 C 0.178 3.822 10 C 0.338 3.662 11 O -0.423 6.423 12 O -0.310 6.310 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.187 4.187 16 C -0.007 4.007 17 O -0.304 6.304 18 H 0.080 0.920 19 H 0.241 0.759 20 H 0.069 0.931 21 H 0.092 0.908 22 H 0.070 0.930 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.885 -1.096 -3.330 7.726 hybrid contribution 0.232 0.902 0.757 1.200 sum 7.118 -0.195 -2.573 7.571 Atomic orbital electron populations 1.69935 1.06839 1.28241 1.45608 1.25264 0.95140 1.00842 0.91786 0.85908 0.80041 0.80206 0.78071 1.22531 1.14122 1.24582 1.21091 0.86579 0.95809 1.54951 0.89234 1.19118 0.95122 0.87641 0.80319 1.24151 0.70916 0.80019 0.91155 1.90563 1.48041 1.67947 1.35701 1.85158 1.77774 1.23829 1.44205 1.21732 0.99145 0.95302 0.98685 1.21491 1.02272 0.97117 0.93927 1.22130 1.00372 0.97941 0.98241 1.22254 1.00537 0.91718 0.86234 1.88035 1.74160 1.54675 1.13508 0.92040 0.75933 0.93120 0.90779 0.93002 0.90418 0.92519 0.91989 0.90929 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.66 13.96 55.43 0.77 -24.88 15 2 C 0.08 2.17 5.45 -17.82 -0.10 2.07 15 3 Si 0.92 22.96 22.83 -169.99 -3.88 19.08 15 4 H -0.30 -7.18 6.36 56.52 0.36 -6.82 15 5 H -0.22 -5.26 4.79 56.52 0.27 -4.99 15 6 H -0.31 -7.95 7.11 56.52 0.40 -7.55 15 7 C -0.55 -14.82 6.64 -34.44 -0.23 -15.05 15 8 H 0.09 2.57 7.11 -52.49 -0.37 2.20 15 9 C 0.22 5.20 0.65 -92.88 -0.06 5.14 15 10 C 0.49 11.83 6.54 36.00 0.24 12.07 15 11 O -0.53 -13.25 16.90 -18.75 -0.32 -13.57 15 12 O -0.50 -10.74 6.50 -44.42 -0.29 -11.03 15 13 C -0.11 -2.32 4.36 -26.59 -0.12 -2.44 15 14 C -0.11 -2.01 5.78 -26.55 -0.15 -2.17 15 15 C -0.15 -2.51 6.14 -26.59 -0.16 -2.67 15 16 C 0.07 1.36 6.57 37.21 0.24 1.61 15 17 O -0.38 -8.83 7.04 -49.06 -0.35 -9.18 15 18 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 19 H 0.38 6.29 9.10 45.56 0.41 6.70 15 20 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.07 1.60 7.95 -51.94 -0.41 1.18 15 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.08 1.53 6.85 -51.93 -0.36 1.17 15 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.07 1.24 8.14 -51.93 -0.42 0.81 15 27 H 0.07 1.48 7.09 -51.93 -0.37 1.11 15 LS Contribution 214.72 15.07 3.24 3.24 Total: -1.00 -31.22 214.72 -3.68 -34.90 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -2.52 Total: 2.88 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.34 Total: -1.44 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.77 Total: -24.88 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.95 Total: -33.78 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -3.88 Total: 19.08 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -31.22 -3.68 -34.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575461045.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.096 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds