Wall clock time and date at job start Mon Mar 30 2020 02:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31473 * 1 3 3 Si 1.86791 * 120.00475 * 2 1 4 4 H 1.48509 * 109.47234 * 270.00097 * 3 2 1 5 5 H 1.48503 * 109.47224 * 29.99797 * 3 2 1 6 6 H 1.48500 * 109.47467 * 150.00054 * 3 2 1 7 7 C 1.38882 * 119.99457 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99981 * 170.47912 * 7 2 1 9 9 N 1.37196 * 120.00019 * 350.46937 * 7 2 1 10 10 C 1.33949 * 125.40870 * 162.44547 * 9 7 2 11 11 O 1.21583 * 123.03776 * 0.02562 * 10 9 7 12 12 N 1.33940 * 113.91684 * 180.02562 * 10 9 7 13 13 C 1.47053 * 109.17932 * 359.97438 * 12 10 9 14 14 C 1.47053 * 125.41079 * 342.44478 * 9 7 2 15 15 H 1.09004 * 110.54902 * 61.40592 * 14 9 7 16 16 C 1.50697 * 110.54989 * 298.73624 * 14 9 7 17 17 O 1.20830 * 119.99892 * 359.97438 * 16 14 9 18 18 O 1.34229 * 119.99979 * 179.97438 * 16 14 9 19 19 H 0.97005 * 119.99889 * 0.02562 * 1 2 3 20 20 H 0.97005 * 125.41258 * 179.73539 * 12 10 9 21 21 H 1.09005 * 110.54846 * 118.59823 * 13 12 10 22 22 H 1.09001 * 110.55358 * 241.40952 * 13 12 10 23 23 H 0.96700 * 116.99993 * 179.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6176 0.0000 4 1 2.4964 2.0463 -1.4001 5 1 1.4463 2.6526 0.7000 6 1 3.5464 1.4400 0.7000 7 6 2.0090 -1.2028 -0.0005 8 1 3.0778 -1.2093 -0.1552 9 7 1.3371 -2.3828 0.1957 10 6 1.8050 -3.6015 -0.1045 11 8 2.9022 -3.7883 -0.5938 12 7 0.9547 -4.5956 0.1832 13 6 -0.2734 -4.0290 0.7603 14 6 -0.0110 -2.5105 0.7689 15 1 -0.7417 -1.9927 0.1475 16 6 -0.0404 -1.9733 2.1765 17 8 0.9648 -1.5213 2.6718 18 8 -1.1833 -1.9967 2.8801 19 1 -0.4850 0.8401 -0.0004 20 1 1.1211 -5.5392 0.0315 21 1 -1.1343 -4.2649 0.1347 22 1 -0.4245 -4.3970 1.7751 23 1 -1.1528 -1.6413 3.7789 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575464269.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:19 Heat of formation + Delta-G solvation = -120.622762 kcal Electronic energy + Delta-G solvation = -13400.237544 eV Core-core repulsion = 10827.420880 eV Total energy + Delta-G solvation = -2572.816664 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.063 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.15832 -40.40412 -37.22853 -36.75564 -35.68579 -33.00783 -30.52917 -27.19218 -25.16001 -22.42892 -22.09794 -19.35881 -18.86411 -17.94788 -17.75930 -17.15324 -16.49482 -16.04762 -15.80101 -15.02301 -14.84446 -14.30678 -13.79871 -13.42326 -13.07595 -12.86222 -12.43517 -12.25274 -12.17511 -11.57873 -11.19511 -11.00387 -10.18407 -9.66497 -8.34301 -5.94802 1.36166 1.39402 1.48820 1.51334 1.97390 2.10294 2.47093 2.49261 3.24519 3.44535 3.61603 4.34791 4.47027 4.57381 4.99502 5.15892 5.43258 5.78883 6.15414 6.32544 6.64230 7.16200 7.23164 7.37002 8.09023 8.72088 Molecular weight = 200.06amu Principal moments of inertia in cm(-1) A = 0.032732 B = 0.018848 C = 0.013634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.238813 B = 1485.176128 C = 2053.146120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.000 4.000 3 Si 0.987 3.013 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.280 1.280 7 C -0.298 4.298 8 H 0.072 0.928 9 N -0.467 5.467 10 C 0.645 3.355 11 O -0.662 6.662 12 N -0.737 5.737 13 C 0.111 3.889 14 C 0.136 3.864 15 H 0.142 0.858 16 C 0.489 3.511 17 O -0.541 6.541 18 O -0.507 6.507 19 H 0.273 0.727 20 H 0.436 0.564 21 H 0.128 0.872 22 H 0.102 0.898 23 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 -4.294 4.352 10.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.199 4.199 3 Si 0.811 3.189 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.206 1.206 7 C -0.425 4.425 8 H 0.090 0.910 9 N -0.191 5.191 10 C 0.346 3.654 11 O -0.548 6.548 12 N -0.401 5.401 13 C -0.014 4.014 14 C 0.029 3.971 15 H 0.159 0.841 16 C 0.331 3.669 17 O -0.429 6.429 18 O -0.319 6.319 19 H 0.083 0.917 20 H 0.279 0.721 21 H 0.146 0.854 22 H 0.120 0.880 23 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -7.330 -4.095 3.856 9.239 hybrid contribution 0.660 0.866 0.625 1.255 sum -6.669 -3.229 4.481 8.659 Atomic orbital electron populations 1.69736 1.06042 1.28341 1.50963 1.25774 0.96716 1.01448 0.95974 0.85019 0.77907 0.77402 0.78581 1.19205 1.19638 1.20556 1.19166 0.92085 0.82501 1.48795 0.91019 1.42616 1.15788 1.04148 1.56577 1.16287 0.84656 0.82556 0.81872 1.90729 1.23292 1.85208 1.55600 1.44797 1.17604 1.08267 1.69464 1.22537 0.89044 0.87976 1.01840 1.21662 0.89304 0.96917 0.89207 0.84083 1.23841 0.80140 0.74770 0.88192 1.90652 1.37277 1.44006 1.70966 1.84469 1.36858 1.77758 1.32825 0.91725 0.72051 0.85395 0.88027 0.72149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.52 10.14 21.65 0.22 -47.30 14 2 C 0.00 0.02 4.88 84.90 0.41 0.43 14 3 Si 0.99 44.76 29.56 68.60 2.03 46.78 14 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 14 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 14 6 H -0.28 -13.08 7.11 99.48 0.71 -12.38 14 7 C -0.30 -17.59 8.83 84.01 0.74 -16.84 14 8 H 0.07 4.53 7.76 -2.91 -0.02 4.50 14 9 N -0.47 -24.95 2.60 -632.55 -1.64 -26.59 14 10 C 0.65 33.18 8.55 179.57 1.54 34.71 14 11 O -0.66 -39.55 17.58 -3.98 -0.07 -39.62 14 12 N -0.74 -26.74 6.37 -477.35 -3.04 -29.78 14 13 C 0.11 3.33 7.70 86.65 0.67 4.00 14 14 C 0.14 5.80 2.83 44.51 0.13 5.93 14 15 H 0.14 6.30 6.49 -2.38 -0.02 6.28 14 16 C 0.49 20.61 6.48 71.23 0.46 21.08 14 17 O -0.54 -27.61 16.15 21.95 0.35 -27.26 14 18 O -0.51 -15.44 13.42 -51.41 -0.69 -16.13 14 19 H 0.27 13.49 8.31 -92.70 -0.77 12.72 14 20 H 0.44 12.60 8.96 -92.70 -0.83 11.77 14 21 H 0.13 2.81 8.14 -2.38 -0.02 2.80 14 22 H 0.10 2.49 7.73 -2.39 -0.02 2.48 14 23 H 0.42 8.96 9.10 -74.06 -0.67 8.28 14 Total: -1.00 -76.82 212.93 0.87 -75.94 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -0.23 Total: 14.65 kcal Atomic # 6 Polarization: 45.36 SS G_CDS: 3.95 Total: 49.30 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -4.47 Total: -103.67 kcal Atomic # 8 Polarization: -82.60 SS G_CDS: -0.41 Total: -83.01 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -76.82 0.87 -75.94 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575464269.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.679 kcal (2) G-P(sol) polarization free energy of solvation -76.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds