Wall clock time and date at job start Mon Mar 30 2020 02:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.98773 * 2 1 4 4 O 1.43746 * 109.87799 * 238.91507 * 2 1 3 5 5 C 1.44378 * 106.97130 * 214.06251 * 4 2 1 6 6 C 1.55001 * 103.49218 * 40.06138 * 5 4 2 7 7 C 1.54097 * 109.87405 * 121.08248 * 2 1 3 8 8 C 1.50694 * 110.49204 * 2.77645 * 7 2 1 9 9 H 1.07997 * 119.99908 * 349.28711 * 8 7 2 10 10 C 1.37876 * 120.00248 * 169.28332 * 8 7 2 11 11 N 1.31514 * 120.00187 * 154.97582 * 10 8 7 12 12 Si 1.86804 * 119.99982 * 334.98289 * 10 8 7 13 13 H 1.48496 * 109.47331 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.46844 * 299.99871 * 12 10 8 15 15 H 1.48504 * 109.47311 * 59.99480 * 12 10 8 16 16 C 1.50700 * 110.59975 * 240.18517 * 7 2 1 17 17 O 1.20829 * 119.99903 * 0.14824 * 16 7 2 18 18 O 1.34224 * 120.00429 * 180.15184 * 16 7 2 19 19 H 1.08994 * 109.47218 * 298.91979 * 1 2 3 20 20 H 1.09004 * 109.47025 * 58.92175 * 1 2 3 21 21 H 1.09000 * 109.47069 * 178.91218 * 1 2 3 22 22 H 1.08994 * 110.62173 * 281.55994 * 5 4 2 23 23 H 1.09003 * 110.75406 * 158.62404 * 5 4 2 24 24 H 1.09002 * 110.90473 * 204.77598 * 6 5 4 25 25 H 1.08998 * 110.90510 * 81.17245 * 6 5 4 26 26 H 0.96995 * 120.00219 * 354.94647 * 11 10 8 27 27 H 0.96700 * 117.00386 * 180.02562 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6980 -1.1577 5 6 3.2379 -1.3641 -0.7647 6 6 2.9195 -1.8914 0.6577 7 6 2.0539 -0.7482 1.2411 8 6 0.9073 -1.3103 2.0412 9 1 -0.1063 -1.0163 1.8122 10 6 1.1522 -2.2001 3.0656 11 7 0.2929 -2.3175 4.0542 12 14 2.7048 -3.2387 3.0494 13 1 2.7319 -4.1073 4.2535 14 1 2.7223 -4.0837 1.8284 15 1 3.8948 -2.3503 3.0536 16 6 2.8938 0.1657 2.0959 17 8 3.0674 1.3141 1.7626 18 8 3.4490 -0.2960 3.2273 19 1 -0.3633 0.4969 0.8995 20 1 -0.3633 0.5305 -0.8802 21 1 -0.3633 -1.0275 -0.0195 22 1 4.0685 -0.6589 -0.7355 23 1 3.4612 -2.1907 -1.4393 24 1 3.8332 -2.0224 1.2375 25 1 2.3539 -2.8220 0.6099 26 1 -0.4756 -1.7275 4.1015 27 1 3.9790 0.3276 3.7425 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575510940.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:46 Heat of formation + Delta-G solvation = -124.654721 kcal Electronic energy + Delta-G solvation = -13962.120840 eV Core-core repulsion = 11492.669680 eV Total energy + Delta-G solvation = -2469.451160 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05830 -38.03635 -35.20933 -33.68306 -31.31827 -30.91091 -26.30566 -23.98884 -22.44996 -21.58120 -19.24353 -17.59267 -17.00400 -16.23352 -15.36556 -14.64043 -14.27460 -14.13771 -13.72262 -13.43587 -12.30758 -12.28326 -11.65122 -11.32109 -11.06402 -10.99326 -10.66033 -10.61923 -10.15482 -9.98981 -9.59488 -9.34970 -8.95241 -8.85714 -8.27274 -6.69527 -4.35039 3.14772 3.34553 3.48823 3.58277 4.10983 4.43491 4.56530 5.08348 5.41803 5.59795 5.66594 5.97153 6.03199 6.18614 6.23181 6.37024 6.41905 6.59537 6.78886 6.80057 7.05713 7.33950 7.61105 7.70894 8.17416 8.62806 8.88923 9.33867 10.66672 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.032568 B = 0.019109 C = 0.018524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.535286 B = 1464.962033 C = 1511.179381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.091 3.909 3 H 0.072 0.928 4 O -0.379 6.379 5 C 0.049 3.951 6 C -0.179 4.179 7 C 0.037 3.963 8 C -0.618 4.618 9 H 0.088 0.912 10 C 0.058 3.942 11 N -0.873 5.873 12 Si 1.039 2.961 13 H -0.298 1.298 14 H -0.287 1.287 15 H -0.250 1.250 16 C 0.488 3.512 17 O -0.557 6.557 18 O -0.496 6.496 19 H 0.068 0.932 20 H 0.037 0.963 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.273 0.727 27 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 0.770 -4.355 7.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.034 3.966 3 H 0.090 0.910 4 O -0.299 6.299 5 C -0.027 4.027 6 C -0.217 4.217 7 C 0.035 3.965 8 C -0.653 4.653 9 H 0.106 0.894 10 C -0.152 4.152 11 N -0.503 5.503 12 Si 0.870 3.130 13 H -0.226 1.226 14 H -0.214 1.214 15 H -0.177 1.177 16 C 0.333 3.667 17 O -0.449 6.449 18 O -0.305 6.305 19 H 0.087 0.913 20 H 0.056 0.944 21 H 0.089 0.911 22 H 0.067 0.933 23 H 0.104 0.896 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.950 -0.406 -4.047 7.208 hybrid contribution -0.334 1.697 -0.103 1.732 sum 5.616 1.290 -4.151 7.102 Atomic orbital electron populations 1.21827 0.93712 1.02780 1.00015 1.22654 0.95417 0.95219 0.83326 0.90986 1.88771 1.39351 1.67986 1.33744 1.23431 0.87838 0.95714 0.95754 1.24006 1.00272 1.01342 0.96050 1.19534 0.94013 0.91011 0.91958 1.21965 0.92442 1.31877 1.19023 0.89379 1.25896 1.02525 0.96264 0.90548 1.70870 1.13414 1.39022 1.26975 0.84476 0.77177 0.76499 0.74876 1.22585 1.21414 1.17667 1.24979 0.74323 0.87973 0.79383 1.90526 1.60171 1.21286 1.72879 1.85042 1.63034 1.46204 1.36248 0.91337 0.94384 0.91060 0.93265 0.89582 0.90641 0.88088 0.91727 0.76266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 8.07 37.16 0.30 -2.33 15 2 C 0.09 2.02 3.67 -26.16 -0.10 1.93 15 3 H 0.07 1.65 6.45 -51.93 -0.34 1.31 15 4 O -0.38 -8.03 11.19 -35.23 -0.39 -8.43 15 5 C 0.05 0.92 7.72 38.21 0.29 1.21 15 6 C -0.18 -3.75 3.86 -24.72 -0.10 -3.84 15 7 C 0.04 0.87 0.60 -155.29 -0.09 0.78 15 8 C -0.62 -16.15 7.43 -34.44 -0.26 -16.41 15 9 H 0.09 2.39 5.06 -52.49 -0.27 2.12 15 10 C 0.06 1.57 5.02 -17.82 -0.09 1.48 15 11 N -0.87 -25.13 13.70 55.43 0.76 -24.37 15 12 Si 1.04 23.93 22.85 -169.99 -3.88 20.05 15 13 H -0.30 -7.13 7.11 56.52 0.40 -6.73 15 14 H -0.29 -6.15 6.10 56.52 0.34 -5.80 15 15 H -0.25 -5.30 4.65 56.52 0.26 -5.04 15 16 C 0.49 11.30 6.87 36.01 0.25 11.55 15 17 O -0.56 -13.44 16.03 -18.75 -0.30 -13.74 15 18 O -0.50 -10.39 9.19 -39.24 -0.36 -10.75 15 19 H 0.07 1.45 7.11 -51.93 -0.37 1.08 15 20 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.07 1.54 7.14 -51.93 -0.37 1.17 15 22 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 23 H 0.09 1.33 8.14 -51.93 -0.42 0.91 15 24 H 0.08 1.49 5.30 -51.93 -0.28 1.22 15 25 H 0.10 2.19 5.54 -51.93 -0.29 1.90 15 26 H 0.27 7.79 8.73 -40.82 -0.36 7.43 15 27 H 0.38 5.94 9.10 45.56 0.41 6.35 15 LS Contribution 212.90 15.07 3.21 3.21 Total: -1.00 -30.18 212.90 -2.86 -33.04 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -2.10 Total: 6.63 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 0.21 Total: -5.64 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.76 Total: -24.37 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -1.06 Total: -32.92 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -3.88 Total: 20.05 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -30.18 -2.86 -33.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575510940.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.613 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds