Wall clock time and date at job start Mon Mar 30 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48503 * 109.47239 * 240.27733 * 3 2 1 5 5 H 1.48495 * 109.47002 * 0.27695 * 3 2 1 6 6 H 1.48492 * 109.47205 * 120.27661 * 3 2 1 7 7 C 1.38955 * 120.00245 * 180.27976 * 2 1 3 8 8 H 1.07999 * 120.00192 * 179.72522 * 7 2 1 9 9 N 1.37099 * 119.99362 * 359.71960 * 7 2 1 10 10 C 1.34784 * 119.99504 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 180.02562 * 10 9 7 13 13 H 1.08996 * 110.33016 * 304.29970 * 12 10 9 14 14 O 1.44416 * 110.37376 * 182.04857 * 12 10 9 15 15 C 1.44520 * 105.23002 * 200.75141 * 14 12 10 16 16 C 1.54483 * 104.87533 * 40.35629 * 15 14 12 17 17 C 1.54484 * 110.37201 * 66.54704 * 12 10 9 18 18 H 1.08998 * 110.51169 * 24.02835 * 17 12 10 19 19 N 1.46904 * 110.51232 * 261.45602 * 17 12 10 20 20 H 0.97000 * 120.00281 * 359.72537 * 1 2 3 21 21 H 0.96999 * 120.00452 * 0.02562 * 9 7 2 22 22 H 1.09001 * 110.27216 * 281.53601 * 15 14 12 23 23 H 1.09001 * 110.40233 * 159.24058 * 15 14 12 24 24 H 1.09003 * 110.51007 * 217.45463 * 16 15 14 25 25 H 1.08992 * 110.63035 * 94.79937 * 16 15 14 26 26 H 1.00897 * 110.99825 * 180.02562 * 19 17 12 27 27 H 1.00905 * 110.99621 * 303.95727 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.0968 1.6994 -1.2159 5 1 1.2831 2.7464 0.0068 6 1 3.1069 1.6935 1.2090 7 6 2.0089 -1.2033 -0.0059 8 1 3.0889 -1.2033 -0.0104 9 7 1.3233 -2.3906 -0.0059 10 6 1.9973 -3.5579 -0.0110 11 8 3.2102 -3.5578 -0.0162 12 6 1.2438 -4.8630 -0.0116 13 1 0.5586 -4.9050 0.8350 14 8 2.1643 -5.9750 0.0309 15 6 1.4157 -7.1067 -0.4665 16 6 0.5869 -6.5473 -1.6441 17 6 0.4711 -5.0373 -1.3379 18 1 0.9339 -4.4483 -2.1298 19 7 -0.9365 -4.6529 -1.1680 20 1 -0.4850 0.8400 0.0040 21 1 0.3533 -2.3906 -0.0021 22 1 0.7571 -7.4948 0.3104 23 1 2.0928 -7.8863 -0.8157 24 1 -0.4004 -7.0086 -1.6694 25 1 1.1061 -6.7067 -2.5891 26 1 -1.4484 -4.7644 -2.0303 27 1 -1.3671 -5.1780 -0.4217 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575579183.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:51 Heat of formation + Delta-G solvation = -81.684350 kcal Electronic energy + Delta-G solvation = -13084.862293 eV Core-core repulsion = 10649.567219 eV Total energy + Delta-G solvation = -2435.295073 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.62843 -37.29580 -34.27536 -33.70097 -31.14051 -29.88257 -28.04342 -24.78872 -22.79523 -20.92395 -19.36181 -17.85655 -16.70506 -15.92318 -15.48623 -14.98737 -14.58830 -14.02900 -13.75444 -13.42443 -13.15305 -12.66858 -12.08518 -11.58290 -11.47425 -11.24752 -11.00837 -10.62555 -10.38487 -10.14580 -9.61692 -9.42388 -8.56547 -8.22480 -7.88429 -6.34064 -3.74920 3.24479 3.29987 3.34601 3.84969 3.97023 4.30135 4.58074 4.79332 4.96691 5.01241 5.28574 5.35537 5.38572 5.58011 5.76037 5.80018 5.96225 6.27221 6.37029 6.95480 7.29530 7.54175 7.61080 8.12633 8.70854 9.24037 9.63473 10.15453 10.82603 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.058615 B = 0.009545 C = 0.008522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.582131 B = 2932.713638 C = 3284.973927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.102 0.898 9 N -0.548 5.548 10 C 0.444 3.556 11 O -0.583 6.583 12 C 0.073 3.927 13 H 0.081 0.919 14 O -0.342 6.342 15 C 0.041 3.959 16 C -0.191 4.191 17 C 0.072 3.928 18 H 0.100 0.900 19 N -0.828 5.828 20 H 0.272 0.728 21 H 0.401 0.599 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.345 0.655 27 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -10.067 -2.571 11.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.432 4.432 8 H 0.120 0.880 9 N -0.185 5.185 10 C 0.229 3.771 11 O -0.468 6.468 12 C 0.011 3.989 13 H 0.098 0.902 14 O -0.259 6.259 15 C -0.036 4.036 16 C -0.231 4.231 17 C -0.041 4.041 18 H 0.118 0.882 19 N -0.358 5.358 20 H 0.082 0.918 21 H 0.236 0.764 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.158 0.842 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.554 -9.151 -2.326 10.089 hybrid contribution -0.696 -0.293 -0.345 0.831 sum -4.250 -9.445 -2.672 10.696 Atomic orbital electron populations 1.69640 1.05855 1.28159 1.49779 1.25273 0.95631 0.99625 0.97220 0.85923 0.78765 0.80456 0.79081 1.19906 1.20971 1.19884 1.19682 0.93367 0.82212 1.47986 0.88026 1.41751 1.09800 1.03843 1.63111 1.19300 0.87987 0.84196 0.85638 1.90534 1.13681 1.86898 1.55690 1.22782 0.90718 0.88607 0.96797 0.90159 1.89328 1.34178 1.16908 1.85496 1.23372 0.95079 0.90659 0.94512 1.23816 1.01006 0.97913 1.00323 1.22816 0.89976 0.93008 0.98321 0.88236 1.58651 1.01802 1.64155 1.11241 0.91849 0.76384 0.92623 0.89224 0.90790 0.90396 0.84171 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.85 13.05 55.50 0.72 -24.12 15 2 C 0.02 0.68 5.50 -17.47 -0.10 0.59 15 3 Si 0.93 21.46 29.55 -169.99 -5.02 16.43 15 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.30 -8.78 9.68 -14.93 -0.14 -8.93 15 8 H 0.10 3.07 7.16 -52.49 -0.38 2.70 15 9 N -0.55 -14.69 5.28 -10.96 -0.06 -14.74 15 10 C 0.44 11.51 7.02 -10.98 -0.08 11.43 15 11 O -0.58 -17.52 16.13 -13.66 -0.22 -17.74 15 12 C 0.07 1.45 3.41 -27.10 -0.09 1.36 15 13 H 0.08 1.47 7.95 -51.93 -0.41 1.06 15 14 O -0.34 -6.83 10.92 -54.44 -0.59 -7.43 15 15 C 0.04 0.57 7.63 37.94 0.29 0.85 15 16 C -0.19 -2.36 6.85 -25.16 -0.17 -2.53 15 17 C 0.07 1.15 3.80 -66.14 -0.25 0.90 15 18 H 0.10 1.83 7.86 -51.93 -0.41 1.42 15 19 N -0.83 -11.33 9.22 -3.33 -0.03 -11.37 15 20 H 0.27 7.12 8.31 -40.82 -0.34 6.79 15 21 H 0.40 10.37 7.90 -40.82 -0.32 10.05 15 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 24 H 0.07 0.71 7.97 -51.93 -0.41 0.30 15 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.34 3.90 9.08 -39.29 -0.36 3.54 15 27 H 0.34 3.92 8.88 -39.29 -0.35 3.57 15 LS Contribution 238.89 15.07 3.60 3.60 Total: -1.00 -33.39 238.89 -5.19 -38.58 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -3.04 Total: 13.11 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.54 Total: 3.67 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.64 Total: -50.23 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.81 Total: -25.17 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -33.39 -5.19 -38.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575579183.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.102 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds