Wall clock time and date at job start Mon Mar 30 2020 02:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48503 * 109.47239 * 240.27733 * 3 2 1 5 5 H 1.48495 * 109.47002 * 0.27695 * 3 2 1 6 6 H 1.48492 * 109.47205 * 120.27661 * 3 2 1 7 7 C 1.38955 * 120.00245 * 180.27976 * 2 1 3 8 8 H 1.07999 * 120.00192 * 179.72522 * 7 2 1 9 9 N 1.37099 * 119.99362 * 359.71960 * 7 2 1 10 10 C 1.34784 * 119.99504 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 180.02562 * 10 9 7 13 13 H 1.08996 * 110.33016 * 304.29970 * 12 10 9 14 14 O 1.44416 * 110.37376 * 182.04857 * 12 10 9 15 15 C 1.44520 * 105.23002 * 200.75141 * 14 12 10 16 16 C 1.54483 * 104.87533 * 40.35629 * 15 14 12 17 17 C 1.54484 * 110.37201 * 66.54704 * 12 10 9 18 18 H 1.08998 * 110.51169 * 24.02835 * 17 12 10 19 19 N 1.46904 * 110.51232 * 261.45602 * 17 12 10 20 20 H 0.97000 * 120.00281 * 359.72537 * 1 2 3 21 21 H 0.96999 * 120.00452 * 0.02562 * 9 7 2 22 22 H 1.09001 * 110.27216 * 281.53601 * 15 14 12 23 23 H 1.09001 * 110.40233 * 159.24058 * 15 14 12 24 24 H 1.09003 * 110.51007 * 217.45463 * 16 15 14 25 25 H 1.08992 * 110.63035 * 94.79937 * 16 15 14 26 26 H 1.00897 * 110.99825 * 180.02562 * 19 17 12 27 27 H 1.00905 * 110.99621 * 303.95727 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.0968 1.6994 -1.2159 5 1 1.2831 2.7464 0.0068 6 1 3.1069 1.6935 1.2090 7 6 2.0089 -1.2033 -0.0059 8 1 3.0889 -1.2033 -0.0104 9 7 1.3233 -2.3906 -0.0059 10 6 1.9973 -3.5579 -0.0110 11 8 3.2102 -3.5578 -0.0162 12 6 1.2438 -4.8630 -0.0116 13 1 0.5586 -4.9050 0.8350 14 8 2.1643 -5.9750 0.0309 15 6 1.4157 -7.1067 -0.4665 16 6 0.5869 -6.5473 -1.6441 17 6 0.4711 -5.0373 -1.3379 18 1 0.9339 -4.4483 -2.1298 19 7 -0.9365 -4.6529 -1.1680 20 1 -0.4850 0.8400 0.0040 21 1 0.3533 -2.3906 -0.0021 22 1 0.7571 -7.4948 0.3104 23 1 2.0928 -7.8863 -0.8157 24 1 -0.4004 -7.0086 -1.6694 25 1 1.1061 -6.7067 -2.5891 26 1 -1.4484 -4.7644 -2.0303 27 1 -1.3671 -5.1780 -0.4217 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575579183.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:49 Heat of formation + Delta-G solvation = -109.566284 kcal Electronic energy + Delta-G solvation = -13086.071344 eV Core-core repulsion = 10649.567219 eV Total energy + Delta-G solvation = -2436.504125 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.14025 -39.19145 -36.05452 -35.34141 -33.26612 -31.06447 -29.56149 -26.75533 -24.16347 -22.19536 -21.20417 -19.98087 -18.37542 -17.21192 -16.92231 -16.77599 -16.10613 -15.75664 -15.52786 -14.99777 -14.55773 -14.28803 -13.53307 -13.38792 -13.09516 -12.89092 -12.44478 -12.38817 -12.10411 -11.83030 -11.52595 -10.96308 -10.29549 -10.03663 -9.61492 -8.46580 -5.97168 1.39280 1.41944 1.53716 1.93994 2.25420 2.63465 3.14771 3.31854 3.49432 3.79989 3.87623 3.95194 4.21287 4.28259 4.46465 4.66221 4.78204 4.94449 5.02542 5.38670 5.68168 5.98524 6.20506 6.58895 6.65007 7.08950 7.52604 8.08202 8.69639 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.058615 B = 0.009545 C = 0.008522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.582131 B = 2932.713638 C = 3284.973927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.007 4.007 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.266 1.266 6 H -0.271 1.271 7 C -0.347 4.347 8 H 0.077 0.923 9 N -0.549 5.549 10 C 0.432 3.568 11 O -0.635 6.635 12 C 0.080 3.920 13 H 0.099 0.901 14 O -0.382 6.382 15 C 0.033 3.967 16 C -0.174 4.174 17 C 0.080 3.920 18 H 0.068 0.932 19 N -0.837 5.837 20 H 0.280 0.720 21 H 0.405 0.595 22 H 0.082 0.918 23 H 0.108 0.892 24 H 0.112 0.888 25 H 0.083 0.917 26 H 0.360 0.640 27 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 -10.628 -2.884 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.208 4.208 3 Si 0.819 3.181 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.196 1.196 7 C -0.476 4.476 8 H 0.095 0.905 9 N -0.186 5.186 10 C 0.219 3.781 11 O -0.524 6.524 12 C 0.018 3.982 13 H 0.116 0.884 14 O -0.300 6.300 15 C -0.044 4.044 16 C -0.214 4.214 17 C -0.034 4.034 18 H 0.086 0.914 19 N -0.371 5.371 20 H 0.090 0.910 21 H 0.240 0.760 22 H 0.100 0.900 23 H 0.126 0.874 24 H 0.130 0.870 25 H 0.102 0.898 26 H 0.176 0.824 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.052 -9.736 -2.646 11.283 hybrid contribution -0.275 -0.159 -0.242 0.399 sum -5.327 -9.895 -2.889 11.603 Atomic orbital electron populations 1.69697 1.06811 1.29577 1.48779 1.26107 0.96609 1.02402 0.95682 0.84952 0.77804 0.76298 0.79006 1.19660 1.18983 1.19647 1.19694 0.92760 0.84038 1.51092 0.90512 1.41772 1.09792 1.03938 1.63127 1.20431 0.87847 0.86051 0.83757 1.90480 1.16158 1.88031 1.57685 1.22621 0.90214 0.85636 0.99708 0.88387 1.89285 1.36010 1.18456 1.86286 1.23760 0.95799 0.89127 0.95681 1.23736 1.02993 0.94702 0.99976 1.22524 0.90549 0.95348 0.94958 0.91391 1.58525 1.00797 1.64926 1.12813 0.91029 0.75978 0.89963 0.87370 0.86970 0.89815 0.82377 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.04 13.05 21.66 0.28 -49.76 15 2 C -0.01 -0.38 5.50 84.93 0.47 0.09 15 3 Si 1.00 43.75 29.55 68.60 2.03 45.78 15 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 15 7 C -0.35 -20.71 9.68 84.04 0.81 -19.90 15 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 15 9 N -0.55 -30.32 5.28 -306.97 -1.62 -31.94 15 10 C 0.43 23.15 7.02 87.66 0.62 23.76 15 11 O -0.64 -39.96 16.13 15.30 0.25 -39.71 15 12 C 0.08 3.16 3.41 30.35 0.10 3.26 15 13 H 0.10 3.48 7.95 -2.39 -0.02 3.46 15 14 O -0.38 -15.07 10.92 -130.61 -1.43 -16.49 15 15 C 0.03 0.80 7.63 72.49 0.55 1.35 15 16 C -0.17 -3.76 6.85 31.61 0.22 -3.54 15 17 C 0.08 2.45 3.80 45.93 0.17 2.63 15 18 H 0.07 2.52 7.86 -2.39 -0.02 2.50 15 19 N -0.84 -21.11 9.22 -164.46 -1.52 -22.62 15 20 H 0.28 14.31 8.31 -92.71 -0.77 13.54 15 21 H 0.40 21.27 7.90 -92.71 -0.73 20.54 15 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.11 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.11 1.60 7.97 -2.39 -0.02 1.58 15 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 15 26 H 0.36 7.20 9.08 -89.70 -0.81 6.39 15 27 H 0.35 7.10 8.88 -89.69 -0.80 6.30 15 Total: -1.00 -74.48 238.89 -0.19 -74.67 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -1.13 Total: 32.43 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 2.94 Total: 7.64 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -2.85 Total: -104.32 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -1.18 Total: -56.20 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -74.48 -0.19 -74.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575579183.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.893 kcal (2) G-P(sol) polarization free energy of solvation -74.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds