Wall clock time and date at job start Mon Mar 30 2020 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 120.00281 * 2 1 4 4 H 1.48503 * 109.47069 * 239.99753 * 3 2 1 5 5 H 1.48495 * 109.47582 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47337 * 120.00263 * 3 2 1 7 7 C 1.38957 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99761 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00194 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99890 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00409 * 179.97438 * 10 9 7 13 13 H 1.09002 * 110.33145 * 55.70362 * 12 10 9 14 14 O 1.44426 * 110.37116 * 177.95434 * 12 10 9 15 15 C 1.44428 * 105.27116 * 159.45368 * 14 12 10 16 16 C 1.54476 * 104.80751 * 319.48723 * 15 14 12 17 17 C 1.54488 * 110.46416 * 293.38916 * 12 10 9 18 18 H 1.08995 * 110.51177 * 335.78751 * 17 12 10 19 19 N 1.46893 * 110.50805 * 98.49925 * 17 12 10 20 20 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 21 21 H 0.97008 * 120.00598 * 359.97438 * 9 7 2 22 22 H 1.09003 * 110.37091 * 78.31980 * 15 14 12 23 23 H 1.08999 * 110.37089 * 200.65033 * 15 14 12 24 24 H 1.08998 * 110.51313 * 142.62168 * 16 15 14 25 25 H 1.09003 * 110.50916 * 265.33620 * 16 15 14 26 26 H 1.00902 * 111.00086 * 179.97438 * 19 17 12 27 27 H 1.00907 * 111.00400 * 303.95018 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2834 2.7464 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8630 0.0011 13 1 0.5551 -4.9032 -0.8430 14 8 2.1639 -5.9750 -0.0473 15 6 1.4170 -7.1087 0.4454 16 6 0.5931 -6.5546 1.6288 17 6 0.4764 -5.0431 1.3299 18 1 0.9439 -4.4597 2.1230 19 7 -0.9318 -4.6579 1.1675 20 1 -0.4849 0.8401 -0.0004 21 1 0.3532 -2.3907 0.0005 22 1 0.7551 -7.4933 -0.3306 23 1 2.0954 -7.8900 0.7881 24 1 -0.3941 -7.0158 1.6561 25 1 1.1185 -6.7183 2.5697 26 1 -1.4402 -4.7731 2.0314 27 1 -1.0108 -3.7122 0.8245 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575579185.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:12 Heat of formation + Delta-G solvation = -83.484878 kcal Electronic energy + Delta-G solvation = -13100.371299 eV Core-core repulsion = 10664.998149 eV Total energy + Delta-G solvation = -2435.373150 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.59510 -37.38213 -34.30252 -33.75446 -31.26714 -29.96475 -28.04975 -24.91993 -22.79951 -20.74266 -19.39219 -18.04643 -16.67070 -15.93135 -15.51683 -14.82945 -14.71788 -14.16603 -13.85233 -13.79062 -13.22821 -12.49762 -11.88064 -11.60071 -11.48739 -11.19288 -11.04663 -10.63765 -10.47201 -10.26515 -9.60030 -9.50237 -8.63092 -8.34772 -8.04292 -6.47972 -3.89115 3.16979 3.23447 3.27686 3.75361 3.90479 4.24774 4.71691 4.73088 4.91172 5.14704 5.24157 5.36045 5.48368 5.74676 5.87391 5.91976 6.05696 6.12910 6.19543 6.98282 7.31222 7.49788 7.54117 7.98300 8.53745 9.11126 9.44198 9.96226 10.69578 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.058811 B = 0.009573 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.985035 B = 2924.212872 C = 3277.262024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.104 0.896 9 N -0.557 5.557 10 C 0.443 3.557 11 O -0.574 6.574 12 C 0.072 3.928 13 H 0.089 0.911 14 O -0.343 6.343 15 C 0.044 3.956 16 C -0.148 4.148 17 C 0.066 3.934 18 H 0.056 0.944 19 N -0.839 5.839 20 H 0.273 0.727 21 H 0.391 0.609 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.342 0.658 27 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 -8.305 3.056 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.432 4.432 8 H 0.122 0.878 9 N -0.195 5.195 10 C 0.228 3.772 11 O -0.457 6.457 12 C 0.010 3.990 13 H 0.106 0.894 14 O -0.260 6.260 15 C -0.033 4.033 16 C -0.186 4.186 17 C -0.047 4.047 18 H 0.074 0.926 19 N -0.371 5.371 20 H 0.083 0.917 21 H 0.224 0.776 22 H 0.078 0.922 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.155 0.845 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.201 -8.727 2.440 9.610 hybrid contribution -0.293 1.543 0.798 1.762 sum -3.494 -7.184 3.238 8.619 Atomic orbital electron populations 1.69592 1.05920 1.28450 1.50205 1.25269 0.95693 0.99737 0.97054 0.85875 0.78760 0.80189 0.79171 1.19780 1.20896 1.19863 1.19692 0.93473 0.82008 1.48030 0.87814 1.41758 1.09015 1.04274 1.64478 1.19552 0.88313 0.84283 0.85098 1.90546 1.13620 1.86855 1.54684 1.22830 0.90573 0.88273 0.97359 0.89384 1.89273 1.34144 1.16801 1.85790 1.23383 0.94866 0.90291 0.94809 1.22983 1.01374 0.94898 0.99329 1.22641 0.89196 0.95966 0.96864 0.92605 1.58878 1.10506 1.32030 1.35698 0.91680 0.77568 0.92242 0.89266 0.89662 0.90837 0.84514 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.95 13.05 55.50 0.72 -23.22 15 2 C 0.02 0.65 5.50 -17.46 -0.10 0.55 15 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 7 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 15 8 H 0.10 3.06 7.16 -52.48 -0.38 2.68 15 9 N -0.56 -14.28 5.28 -10.96 -0.06 -14.34 15 10 C 0.44 11.21 7.03 -10.99 -0.08 11.14 15 11 O -0.57 -16.96 16.13 -13.66 -0.22 -17.18 15 12 C 0.07 1.44 3.38 -27.10 -0.09 1.35 15 13 H 0.09 1.68 8.06 -51.93 -0.42 1.26 15 14 O -0.34 -6.98 10.91 -54.44 -0.59 -7.57 15 15 C 0.04 0.63 7.63 37.93 0.29 0.92 15 16 C -0.15 -1.97 6.88 -25.16 -0.17 -2.15 15 17 C 0.07 1.09 3.79 -66.14 -0.25 0.84 15 18 H 0.06 1.02 7.87 -51.93 -0.41 0.61 15 19 N -0.84 -11.98 9.17 -3.34 -0.03 -12.01 15 20 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 21 H 0.39 9.33 6.66 -40.82 -0.27 9.06 15 22 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 23 H 0.09 1.09 8.14 -51.93 -0.42 0.66 15 24 H 0.08 0.98 7.97 -51.93 -0.41 0.56 15 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.34 4.05 9.08 -39.29 -0.36 3.69 15 27 H 0.35 5.46 7.78 -39.29 -0.31 5.15 15 LS Contribution 236.62 15.07 3.57 3.57 Total: -1.00 -31.83 236.62 -5.13 -36.96 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -2.95 Total: 13.90 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.54 Total: 4.01 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.64 Total: -49.58 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.81 Total: -24.75 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.83 -5.13 -36.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575579185.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.526 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds