Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99844 * 2 1 4 4 H 1.48500 * 109.47210 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47689 * 300.00280 * 3 2 1 6 6 H 1.48507 * 109.47005 * 60.00171 * 3 2 1 7 7 C 1.37870 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00283 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99981 * 359.97438 * 7 2 1 10 10 C 1.53070 * 109.45322 * 59.79296 * 9 7 2 11 11 C 1.53195 * 109.29524 * 181.24287 * 10 9 7 12 12 N 1.46919 * 108.89273 * 305.57804 * 11 10 9 13 13 N 1.40099 * 120.63350 * 233.51657 * 12 11 10 14 14 O 1.21805 * 119.99856 * 359.97438 * 13 12 11 15 15 O 1.21802 * 120.00464 * 179.97438 * 13 12 11 16 16 C 1.46928 * 118.73982 * 53.53793 * 12 11 10 17 17 C 1.53039 * 109.46072 * 180.02562 * 9 7 2 18 18 H 0.97008 * 120.00127 * 0.02562 * 1 2 3 19 19 H 1.09007 * 109.44766 * 299.96549 * 9 7 2 20 20 H 1.08997 * 109.38860 * 61.36474 * 10 9 7 21 21 H 1.09003 * 109.62046 * 301.25816 * 10 9 7 22 22 H 1.09002 * 109.58720 * 185.71834 * 11 10 9 23 23 H 1.08996 * 109.58651 * 65.43731 * 11 10 9 24 24 H 1.08998 * 109.58787 * 66.18123 * 16 12 11 25 25 H 1.09007 * 109.58600 * 186.46436 * 16 12 11 26 26 H 1.09002 * 109.49876 * 58.66270 * 17 9 7 27 27 H 1.09005 * 109.52615 * 298.58519 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 0.3668 -2.5772 -1.2475 11 6 -0.4207 -3.8911 -1.2282 12 7 0.5219 -5.0086 -1.0826 13 7 0.5103 -6.0752 -1.9909 14 8 -0.2867 -6.0822 -2.9119 15 8 1.2973 -6.9956 -1.8596 16 6 1.4767 -4.9866 0.0339 17 6 2.2457 -3.6621 -0.0005 18 1 -0.4851 0.8401 -0.0004 19 1 0.6253 -2.5569 0.8902 20 1 0.9937 -2.5418 -2.1385 21 1 -0.3276 -1.7370 -1.2571 22 1 -0.9743 -3.9991 -2.1610 23 1 -1.1162 -3.8880 -0.3889 24 1 0.9376 -5.0713 0.9775 25 1 2.1736 -5.8189 -0.0648 26 1 2.8883 -3.5913 0.8771 27 1 2.8561 -3.6195 -0.9027 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584636507.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = -10.373968 kcal Electronic energy + Delta-G solvation = -13222.238911 eV Core-core repulsion = 10790.036087 eV Total energy + Delta-G solvation = -2432.202823 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.03231 -39.31841 -37.62711 -35.47124 -33.10812 -32.01623 -28.80717 -26.19454 -24.25676 -23.47799 -21.35948 -19.84976 -19.73092 -18.63930 -18.40710 -16.58737 -15.95126 -15.13815 -15.08060 -14.63496 -14.55206 -13.69996 -13.45661 -12.87866 -12.58603 -12.57864 -12.51603 -12.38507 -12.21250 -12.05265 -11.54956 -11.16299 -10.96001 -10.46196 -10.12127 -8.12189 -6.24228 -0.25042 -0.16782 1.40677 1.45455 1.53902 2.42966 2.99829 3.16464 3.99804 4.07052 4.12748 4.26889 4.38314 4.49313 4.60932 4.80721 4.96582 5.09875 5.22941 5.35438 5.60459 5.90681 6.01883 6.07136 6.33182 6.78809 6.85592 7.44639 8.92203 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.069518 B = 0.009098 C = 0.008556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.679295 B = 3076.730257 C = 3271.853576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.040 3.960 10 C -0.114 4.114 11 C 0.120 3.880 12 N -0.473 5.473 13 N 0.234 4.766 14 O -0.256 6.256 15 O -0.241 6.241 16 C 0.116 3.884 17 C -0.115 4.115 18 H 0.262 0.738 19 H 0.019 0.981 20 H 0.028 0.972 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 -5.858 0.991 5.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.022 3.978 10 C -0.154 4.154 11 C 0.000 4.000 12 N -0.338 5.338 13 N 0.616 4.384 14 O -0.426 6.426 15 O -0.416 6.416 16 C -0.004 4.004 17 C -0.154 4.154 18 H 0.072 0.928 19 H 0.037 0.963 20 H 0.047 0.953 21 H 0.112 0.888 22 H 0.114 0.886 23 H 0.117 0.883 24 H 0.125 0.875 25 H 0.128 0.872 26 H 0.109 0.891 27 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.533 -5.559 1.145 5.700 hybrid contribution 0.329 0.919 -0.333 1.032 sum 0.862 -4.639 0.811 4.788 Atomic orbital electron populations 1.69910 1.06821 1.27242 1.51257 1.25611 0.95649 1.01990 0.94824 0.85659 0.79126 0.80311 0.77455 1.19495 1.21048 1.20709 1.21549 0.93143 0.91935 1.50424 0.92939 1.18713 0.93147 0.92333 0.93647 1.21942 0.99876 0.94618 0.98941 1.22356 0.90713 0.82529 1.04392 1.53770 1.40627 1.14951 1.24493 1.43379 0.99259 0.97907 0.97904 1.94605 1.38965 1.85241 1.23836 1.94573 1.39367 1.26269 1.81355 1.22406 0.91583 1.00459 0.85926 1.21974 0.98314 0.92857 1.02225 0.92831 0.96317 0.95309 0.88850 0.88582 0.88260 0.87470 0.87230 0.89108 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.03 11.30 21.45 0.24 -47.79 15 2 C 0.02 0.94 5.30 84.65 0.45 1.39 15 3 Si 0.95 40.99 29.54 68.60 2.03 43.02 15 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 15 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 15 7 C -0.53 -26.63 8.56 25.60 0.22 -26.41 15 8 H 0.05 2.62 7.74 -2.91 -0.02 2.59 15 9 C 0.04 1.73 2.06 -11.50 -0.02 1.71 15 10 C -0.11 -4.78 5.16 30.68 0.16 -4.62 15 11 C 0.12 4.10 6.57 86.36 0.57 4.67 15 12 N -0.47 -15.97 3.99 -513.07 -2.05 -18.02 15 13 N 0.23 8.60 5.15 37.02 0.19 8.79 15 14 O -0.26 -9.85 18.05 18.88 0.34 -9.51 15 15 O -0.24 -8.86 18.05 18.88 0.34 -8.51 15 16 C 0.12 3.39 6.58 86.36 0.57 3.96 15 17 C -0.11 -3.99 5.30 30.67 0.16 -3.83 15 18 H 0.26 13.25 8.31 -92.70 -0.77 12.48 15 19 H 0.02 0.86 8.14 -2.38 -0.02 0.84 15 20 H 0.03 1.25 8.14 -2.39 -0.02 1.23 15 21 H 0.09 4.40 6.03 -2.39 -0.01 4.39 15 22 H 0.10 3.16 7.10 -2.39 -0.02 3.15 15 23 H 0.10 3.10 8.14 -2.39 -0.02 3.08 15 24 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15 25 H 0.11 2.88 7.09 -2.38 -0.02 2.86 15 26 H 0.09 2.88 8.14 -2.39 -0.02 2.86 15 27 H 0.05 1.72 8.14 -2.38 -0.02 1.70 15 Total: -1.00 -55.27 232.06 4.36 -50.92 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.16 Total: 4.25 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 2.10 Total: -23.14 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -1.62 Total: -57.02 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.68 Total: -18.03 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -55.27 4.36 -50.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584636507.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.543 kcal (2) G-P(sol) polarization free energy of solvation -55.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds