Wall clock time and date at job start Mon Mar 30 2020 02:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99876 * 2 1 4 4 H 1.48498 * 109.47147 * 270.00292 * 3 2 1 5 5 H 1.48497 * 109.47168 * 30.00400 * 3 2 1 6 6 H 1.48500 * 109.47080 * 150.00571 * 3 2 1 7 7 C 1.37878 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99654 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00305 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47400 * 179.97438 * 9 7 2 11 11 C 1.50700 * 110.45404 * 300.70163 * 10 9 7 12 12 O 1.20826 * 120.00162 * 241.42493 * 11 10 9 13 13 O 1.34234 * 120.00068 * 61.14920 * 11 10 9 14 14 C 1.54509 * 110.63098 * 178.01684 * 10 9 7 15 15 C 1.54472 * 104.06417 * 241.29687 * 14 10 9 16 16 O 1.44426 * 104.80449 * 336.02289 * 15 14 10 17 17 C 1.44432 * 105.27559 * 40.50712 * 16 15 14 18 18 H 0.97001 * 120.00455 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.46777 * 59.99736 * 9 7 2 20 20 H 1.09005 * 109.47265 * 299.99861 * 9 7 2 21 21 H 0.96706 * 116.99872 * 179.97438 * 13 11 10 22 22 H 1.09002 * 110.50928 * 359.93999 * 14 10 9 23 23 H 1.09003 * 110.50974 * 122.64768 * 14 10 9 24 24 H 1.08997 * 110.37262 * 217.19028 * 15 14 10 25 25 H 1.09005 * 110.37226 * 94.84586 * 15 14 10 26 26 H 1.08996 * 110.37276 * 200.65725 * 17 16 15 27 27 H 1.09004 * 110.36909 * 78.32372 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 3.5180 -3.3730 1.2135 12 8 4.3017 -3.8171 2.0188 13 8 2.1986 -3.5309 1.4034 14 6 5.5656 -2.6679 -0.0516 15 6 5.8829 -3.4104 -1.3685 16 8 4.7092 -4.2090 -1.6339 17 6 3.5887 -3.3637 -1.2932 18 1 -0.4851 0.8400 0.0004 19 1 3.8752 -0.6803 0.8889 20 1 3.8746 -0.6799 -0.8912 21 1 1.9236 -4.0107 2.1968 22 1 5.9675 -1.6550 -0.0779 23 1 5.9646 -3.2162 0.8018 24 1 6.7564 -4.0500 -1.2424 25 1 6.0470 -2.6972 -2.1762 26 1 2.7000 -3.9674 -1.1094 27 1 3.4011 -2.6433 -2.0894 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642844448.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:11 Heat of formation + Delta-G solvation = -165.707895 kcal Electronic energy + Delta-G solvation = -13471.104825 eV Core-core repulsion = 10999.873466 eV Total energy + Delta-G solvation = -2471.231359 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82059 -39.68932 -37.03190 -35.72497 -33.88208 -30.98524 -28.94250 -25.35298 -24.33911 -23.41595 -20.66052 -19.17505 -18.62985 -17.72457 -17.18709 -16.51497 -16.12742 -15.97550 -15.54767 -14.67553 -14.34088 -13.94024 -13.64557 -13.46675 -12.72386 -12.51959 -12.43200 -12.38436 -12.20614 -11.69693 -11.47452 -11.38576 -11.13981 -10.72003 -10.64651 -8.18107 -6.20916 1.27002 1.38833 1.42338 1.50118 2.26002 2.42538 3.02484 3.15768 3.47032 3.85248 4.10703 4.22253 4.41254 4.46300 4.68495 4.82598 4.86514 4.94011 5.07793 5.11131 5.26561 5.63127 5.67881 5.80540 6.38409 6.94045 7.15298 7.41551 8.96932 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.037294 B = 0.013458 C = 0.012025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.604191 B = 2080.037960 C = 2327.844245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.930 3.070 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.250 1.250 7 C -0.517 4.517 8 H 0.072 0.928 9 C 0.005 3.995 10 C -0.078 4.078 11 C 0.507 3.493 12 O -0.556 6.556 13 O -0.490 6.490 14 C -0.148 4.148 15 C 0.046 3.954 16 O -0.397 6.397 17 C 0.075 3.925 18 H 0.262 0.738 19 H 0.021 0.979 20 H 0.049 0.951 21 H 0.411 0.589 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.113 0.887 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.147 -3.496 -1.554 10.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.755 3.245 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.174 1.174 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.033 4.033 10 C -0.079 4.079 11 C 0.352 3.648 12 O -0.449 6.449 13 O -0.301 6.301 14 C -0.186 4.186 15 C -0.030 4.030 16 O -0.316 6.316 17 C -0.002 4.002 18 H 0.071 0.929 19 H 0.039 0.961 20 H 0.067 0.933 21 H 0.270 0.730 22 H 0.121 0.879 23 H 0.104 0.896 24 H 0.131 0.869 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.312 -3.511 -1.780 11.038 hybrid contribution -0.507 0.749 0.894 1.272 sum 9.805 -2.762 -0.886 10.225 Atomic orbital electron populations 1.70040 1.08016 1.27603 1.53032 1.25799 0.95386 1.02581 0.94853 0.85958 0.79629 0.79716 0.79180 1.18943 1.21900 1.17360 1.21549 0.90501 0.94507 1.48957 0.91038 1.19633 0.95915 0.89612 0.98126 1.21887 0.96804 0.97441 0.91817 1.23253 0.80084 0.74786 0.86680 1.90568 1.57735 1.49573 1.47018 1.84871 1.25092 1.71114 1.48993 1.23182 0.91286 1.03648 1.00459 1.23640 0.89118 0.94934 0.95340 1.89070 1.16149 1.38793 1.87600 1.23315 0.89676 0.93402 0.93797 0.92872 0.96102 0.93321 0.72957 0.87944 0.89563 0.86850 0.90022 0.89507 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.68 13.96 21.45 0.30 -56.38 15 2 C 0.01 0.59 5.47 84.66 0.46 1.05 15 3 Si 0.93 41.70 27.47 68.60 1.88 43.58 15 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 15 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 15 6 H -0.25 -10.40 6.54 99.48 0.65 -9.75 15 7 C -0.52 -27.02 8.21 25.60 0.21 -26.81 15 8 H 0.07 4.06 5.96 -2.91 -0.02 4.04 15 9 C 0.00 0.19 2.84 29.85 0.08 0.28 15 10 C -0.08 -2.94 0.72 -51.91 -0.04 -2.98 15 11 C 0.51 20.44 6.86 71.24 0.49 20.93 15 12 O -0.56 -23.34 16.05 21.96 0.35 -22.99 15 13 O -0.49 -19.19 10.48 -51.46 -0.54 -19.73 15 14 C -0.15 -4.49 6.32 31.61 0.20 -4.29 15 15 C 0.05 1.19 7.63 72.48 0.55 1.75 15 16 O -0.40 -13.31 11.65 -148.98 -1.74 -15.04 15 17 C 0.07 2.70 6.05 72.48 0.44 3.14 15 18 H 0.26 14.88 8.31 -92.71 -0.77 14.10 15 19 H 0.02 0.91 7.20 -2.38 -0.02 0.89 15 20 H 0.05 1.93 7.55 -2.38 -0.02 1.91 15 21 H 0.41 11.81 9.10 -74.05 -0.67 11.13 15 22 H 0.10 2.70 7.74 -2.39 -0.02 2.69 15 23 H 0.09 2.75 6.51 -2.39 -0.02 2.73 15 24 H 0.11 2.39 8.14 -2.39 -0.02 2.37 15 25 H 0.08 1.80 8.14 -2.38 -0.02 1.78 15 26 H 0.09 3.30 7.66 -2.39 -0.02 3.28 15 27 H 0.08 2.94 7.86 -2.38 -0.02 2.93 15 Total: -1.00 -65.70 228.63 3.12 -62.58 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.46 Total: 14.91 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 2.40 Total: -6.93 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.30 Total: -56.38 kcal Atomic # 8 Polarization: -55.84 SS G_CDS: -1.92 Total: -57.76 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.88 Total: 43.58 kcal Total: -65.70 3.12 -62.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642844448.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.128 kcal (2) G-P(sol) polarization free energy of solvation -65.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds