Wall clock time and date at job start Mon Mar 30 2020 03:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36933 * 119.99406 * 2 1 4 4 H 1.07999 * 120.00820 * 38.96882 * 3 2 1 5 5 C 1.38815 * 119.99948 * 218.96934 * 3 2 1 6 6 N 1.31619 * 119.99721 * 27.06943 * 5 3 2 7 7 Si 1.86802 * 120.00439 * 207.07368 * 5 3 2 8 8 H 1.48500 * 109.47164 * 89.99409 * 7 5 3 9 9 H 1.48502 * 109.46858 * 329.99801 * 7 5 3 10 10 H 1.48492 * 109.47207 * 209.99918 * 7 5 3 11 11 C 1.46494 * 120.00069 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47668 * 270.00106 * 11 2 1 13 13 H 1.09001 * 110.46435 * 303.82924 * 12 11 2 14 14 C 1.54083 * 110.52154 * 181.04592 * 12 11 2 15 15 N 1.47095 * 103.77314 * 241.37028 * 14 12 11 16 16 C 1.33999 * 108.88497 * 359.97438 * 15 14 12 17 17 O 1.21514 * 123.07909 * 179.97438 * 16 15 14 18 18 O 1.33771 * 113.85318 * 0.02562 * 16 15 14 19 19 H 1.08996 * 109.46724 * 95.13723 * 1 2 3 20 20 H 1.09000 * 109.46951 * 215.13193 * 1 2 3 21 21 H 1.08993 * 109.47325 * 335.13161 * 1 2 3 22 22 H 0.97001 * 120.00304 * 6.08266 * 6 5 3 23 23 H 1.08995 * 109.47306 * 30.00751 * 11 2 1 24 24 H 1.09009 * 109.46572 * 150.00488 * 11 2 1 25 25 H 1.08995 * 110.56744 * 359.94142 * 14 12 11 26 26 H 1.09000 * 110.56798 * 122.80254 * 14 12 11 27 27 H 0.97004 * 125.55747 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7899 2.0172 0.5882 5 6 3.3061 1.3198 -0.7561 6 7 3.4741 0.5878 -1.8369 7 14 4.6240 2.5387 -0.2395 8 1 5.5909 1.8680 0.6664 9 1 3.9918 3.6804 0.4692 10 1 5.3369 3.0367 -1.4431 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7098 1.4432 13 1 2.9828 -0.9313 1.9918 14 6 3.2456 -3.0306 1.4720 15 7 2.3408 -3.9675 2.1556 16 6 1.2113 -3.3226 2.4777 17 8 0.2837 -3.8565 3.0531 18 8 1.1976 -2.0373 2.1069 19 1 -0.3632 -0.0920 -1.0235 20 1 -0.3633 -0.8405 0.5914 21 1 -0.3633 0.9323 0.4321 22 1 2.7547 0.0200 -2.1548 23 1 1.6086 -2.0285 -0.5130 24 1 3.1501 -1.1384 -0.5133 25 1 3.4567 -3.3726 0.4589 26 1 4.1700 -2.9101 2.0369 27 1 2.5309 -4.9002 2.3427 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685968128.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:14 Heat of formation + Delta-G solvation = -55.160103 kcal Electronic energy + Delta-G solvation = -13290.641525 eV Core-core repulsion = 10856.496629 eV Total energy + Delta-G solvation = -2434.144896 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.09890 -37.08295 -35.59889 -34.37451 -31.41530 -30.04449 -25.87300 -25.28252 -22.57104 -21.96051 -20.76860 -17.82993 -17.32266 -16.49994 -16.05284 -14.52203 -14.46396 -14.05181 -13.85638 -13.47578 -13.22312 -13.04287 -12.29060 -11.74549 -11.24532 -10.88799 -10.83276 -10.62673 -10.34796 -10.17909 -10.12393 -9.52747 -9.16914 -8.47492 -6.94088 -6.16755 -3.52550 3.05562 3.09182 3.41095 3.44940 3.61719 3.97647 4.43095 4.57434 5.04216 5.21804 5.30291 5.47734 5.62185 5.90516 5.97042 6.45282 6.49004 6.63347 6.82670 6.84050 6.95408 7.68180 8.03311 8.37872 8.44910 8.98796 9.66862 10.15463 11.00520 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.048331 B = 0.010774 C = 0.009845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.197979 B = 2598.290738 C = 2843.420548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.594 5.594 3 C -0.358 4.358 4 H 0.054 0.946 5 C -0.018 4.018 6 N -0.902 5.902 7 Si 1.064 2.936 8 H -0.291 1.291 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.137 3.863 12 C 0.051 3.949 13 H 0.115 0.885 14 C 0.069 3.931 15 N -0.741 5.741 16 C 0.640 3.360 17 O -0.545 6.545 18 O -0.314 6.314 19 H 0.002 0.998 20 H 0.033 0.967 21 H 0.040 0.960 22 H 0.269 0.731 23 H 0.040 0.960 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 -6.245 4.341 8.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.316 5.316 3 C -0.487 4.487 4 H 0.071 0.929 5 C -0.221 4.221 6 N -0.540 5.540 7 Si 0.893 3.107 8 H -0.218 1.218 9 H -0.216 1.216 10 H -0.215 1.215 11 C 0.009 3.991 12 C -0.007 4.007 13 H 0.132 0.868 14 C -0.057 4.057 15 N -0.413 5.413 16 C 0.394 3.606 17 O -0.432 6.432 18 O -0.223 6.223 19 H 0.020 0.980 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 3.411 -5.514 4.240 7.747 hybrid contribution -1.256 -0.989 0.409 1.650 sum 2.155 -6.503 4.649 8.279 Atomic orbital electron populations 1.21154 0.84956 0.99180 0.96944 1.43713 1.00448 1.01568 1.85850 1.19970 1.10832 0.91905 1.25992 0.92875 1.26038 1.01358 1.01967 0.92775 1.70778 1.37101 1.28171 1.17949 0.83538 0.75844 0.75650 0.75673 1.21780 1.21590 1.21465 1.21296 0.99894 0.88237 0.89637 1.25163 0.80335 0.95377 0.99859 0.86770 1.22917 0.94210 0.89372 0.99175 1.45983 1.17868 1.14483 1.63014 1.18800 0.82870 0.81119 0.77855 1.91002 1.38273 1.67808 1.46163 1.87380 1.39934 1.24302 1.70720 0.98033 0.94850 0.94167 0.92031 0.94122 0.88363 0.89052 0.89459 0.73043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.77 10.60 59.85 0.63 3.40 15 2 N -0.59 -14.58 2.56 -181.12 -0.46 -15.05 15 3 C -0.36 -9.60 9.32 -15.06 -0.14 -9.74 15 4 H 0.05 1.48 7.96 -52.49 -0.42 1.06 15 5 C -0.02 -0.47 4.78 -17.43 -0.08 -0.55 15 6 N -0.90 -25.16 12.29 55.49 0.68 -24.48 15 7 Si 1.06 23.63 30.00 -169.99 -5.10 18.53 15 8 H -0.29 -6.15 7.11 56.52 0.40 -5.75 15 9 H -0.29 -6.25 7.11 56.52 0.40 -5.85 15 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 11 C 0.14 2.90 4.47 -4.04 -0.02 2.88 15 12 C 0.05 0.92 4.11 -26.16 -0.11 0.81 15 13 H 0.11 2.12 8.14 -51.93 -0.42 1.70 15 14 C 0.07 0.91 7.71 -3.15 -0.02 0.88 15 15 N -0.74 -10.17 6.40 -64.73 -0.41 -10.58 15 16 C 0.64 11.95 9.16 53.71 0.49 12.44 15 17 O -0.55 -11.83 18.04 -19.12 -0.34 -12.17 15 18 O -0.31 -6.33 9.72 -37.83 -0.37 -6.70 15 19 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 15 20 H 0.03 0.72 7.13 -51.93 -0.37 0.35 15 21 H 0.04 0.89 8.00 -51.93 -0.42 0.47 15 22 H 0.27 7.64 7.46 -40.82 -0.30 7.33 15 23 H 0.04 0.83 8.07 -51.93 -0.42 0.41 15 24 H 0.10 2.23 5.74 -51.92 -0.30 1.93 15 25 H 0.09 1.09 7.73 -51.93 -0.40 0.69 15 26 H 0.09 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.43 4.53 8.96 -40.82 -0.37 4.16 15 LS Contribution 235.96 15.07 3.56 3.56 Total: -1.00 -31.52 235.96 -4.75 -36.27 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.06 Total: 0.50 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 0.75 Total: 10.13 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.20 Total: -50.11 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.71 Total: -18.87 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.10 Total: 18.53 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.52 -4.75 -36.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968128.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.890 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds