Wall clock time and date at job start Mon Mar 30 2020 03:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36933 * 119.99406 * 2 1 4 4 H 1.07999 * 120.00820 * 38.96882 * 3 2 1 5 5 C 1.38815 * 119.99948 * 218.96934 * 3 2 1 6 6 N 1.31619 * 119.99721 * 27.06943 * 5 3 2 7 7 Si 1.86802 * 120.00439 * 207.07368 * 5 3 2 8 8 H 1.48500 * 109.47164 * 89.99409 * 7 5 3 9 9 H 1.48502 * 109.46858 * 329.99801 * 7 5 3 10 10 H 1.48492 * 109.47207 * 209.99918 * 7 5 3 11 11 C 1.46494 * 120.00069 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47668 * 270.00106 * 11 2 1 13 13 H 1.09001 * 110.46435 * 303.82924 * 12 11 2 14 14 C 1.54083 * 110.52154 * 181.04592 * 12 11 2 15 15 N 1.47095 * 103.77314 * 241.37028 * 14 12 11 16 16 C 1.33999 * 108.88497 * 359.97438 * 15 14 12 17 17 O 1.21514 * 123.07909 * 179.97438 * 16 15 14 18 18 O 1.33771 * 113.85318 * 0.02562 * 16 15 14 19 19 H 1.08996 * 109.46724 * 95.13723 * 1 2 3 20 20 H 1.09000 * 109.46951 * 215.13193 * 1 2 3 21 21 H 1.08993 * 109.47325 * 335.13161 * 1 2 3 22 22 H 0.97001 * 120.00304 * 6.08266 * 6 5 3 23 23 H 1.08995 * 109.47306 * 30.00751 * 11 2 1 24 24 H 1.09009 * 109.46572 * 150.00488 * 11 2 1 25 25 H 1.08995 * 110.56744 * 359.94142 * 14 12 11 26 26 H 1.09000 * 110.56798 * 122.80254 * 14 12 11 27 27 H 0.97004 * 125.55747 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7899 2.0172 0.5882 5 6 3.3061 1.3198 -0.7561 6 7 3.4741 0.5878 -1.8369 7 14 4.6240 2.5387 -0.2395 8 1 5.5909 1.8680 0.6664 9 1 3.9918 3.6804 0.4692 10 1 5.3369 3.0367 -1.4431 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7098 1.4432 13 1 2.9828 -0.9313 1.9918 14 6 3.2456 -3.0306 1.4720 15 7 2.3408 -3.9675 2.1556 16 6 1.2113 -3.3226 2.4777 17 8 0.2837 -3.8565 3.0531 18 8 1.1976 -2.0373 2.1069 19 1 -0.3632 -0.0920 -1.0235 20 1 -0.3633 -0.8405 0.5914 21 1 -0.3633 0.9323 0.4321 22 1 2.7547 0.0200 -2.1548 23 1 1.6086 -2.0285 -0.5130 24 1 3.1501 -1.1384 -0.5133 25 1 3.4567 -3.3726 0.4589 26 1 4.1700 -2.9101 2.0369 27 1 2.5309 -4.9002 2.3427 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685968128.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:08 Heat of formation + Delta-G solvation = -78.972680 kcal Electronic energy + Delta-G solvation = -13291.674115 eV Core-core repulsion = 10856.496629 eV Total energy + Delta-G solvation = -2435.177487 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.51406 -38.67228 -37.41510 -35.68631 -33.37162 -31.61503 -27.56002 -27.07202 -24.08054 -23.42120 -22.49424 -19.47938 -18.97910 -17.94209 -17.51265 -16.18971 -16.10295 -15.66562 -15.56943 -15.19826 -14.67757 -14.45260 -13.87816 -13.37086 -13.10099 -12.69753 -12.53633 -12.34372 -11.90130 -11.87810 -11.72758 -11.44143 -10.47860 -10.35479 -8.93867 -8.21270 -5.60025 1.61675 1.64847 1.69720 1.81018 1.89618 2.63738 2.65412 3.05710 3.28413 3.72139 3.87486 3.94515 4.36524 4.58084 4.63494 4.65353 4.83289 4.89769 4.98305 5.10515 5.81942 5.92220 6.28526 6.36048 7.03218 7.06360 7.68177 8.15760 8.90104 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.048331 B = 0.010774 C = 0.009845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.197979 B = 2598.290738 C = 2843.420548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.614 5.614 3 C -0.370 4.370 4 H 0.037 0.963 5 C -0.054 4.054 6 N -0.919 5.919 7 Si 1.112 2.888 8 H -0.269 1.269 9 H -0.282 1.282 10 H -0.293 1.293 11 C 0.141 3.859 12 C 0.052 3.948 13 H 0.109 0.891 14 C 0.080 3.920 15 N -0.714 5.714 16 C 0.635 3.365 17 O -0.583 6.583 18 O -0.339 6.339 19 H 0.000 1.000 20 H 0.040 0.960 21 H 0.036 0.964 22 H 0.255 0.745 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.237 -6.880 4.901 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.337 5.337 3 C -0.500 4.500 4 H 0.055 0.945 5 C -0.253 4.253 6 N -0.557 5.557 7 Si 0.936 3.064 8 H -0.195 1.195 9 H -0.208 1.208 10 H -0.220 1.220 11 C 0.014 3.986 12 C -0.005 4.005 13 H 0.126 0.874 14 C -0.044 4.044 15 N -0.387 5.387 16 C 0.388 3.612 17 O -0.473 6.473 18 O -0.249 6.249 19 H 0.018 0.982 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.130 0.870 26 H 0.144 0.856 27 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 5.036 -6.199 4.807 9.322 hybrid contribution -1.808 -0.796 0.199 1.986 sum 3.228 -6.995 5.006 9.187 Atomic orbital electron populations 1.21112 0.84524 0.99294 0.96912 1.43961 1.01120 1.02209 1.86373 1.20056 1.11509 0.92686 1.25719 0.94549 1.27282 1.03058 1.02905 0.92085 1.70904 1.36584 1.29210 1.19052 0.82893 0.73887 0.74114 0.75477 1.19465 1.20791 1.21986 1.21265 0.98723 0.86921 0.91678 1.24943 0.80376 0.98043 0.97185 0.87358 1.23010 0.94117 0.86241 1.01057 1.45822 1.16187 1.15234 1.61457 1.18926 0.83586 0.80803 0.77844 1.90970 1.39980 1.68336 1.48020 1.87341 1.41106 1.25449 1.70995 0.98156 0.94128 0.94511 0.93510 0.93811 0.89678 0.87026 0.85626 0.70866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.75 10.60 127.77 1.35 7.10 15 2 N -0.61 -30.18 2.56 -726.93 -1.86 -32.04 15 3 C -0.37 -19.90 9.32 84.03 0.78 -19.12 15 4 H 0.04 2.05 7.96 -2.91 -0.02 2.03 15 5 C -0.05 -2.84 4.78 84.86 0.41 -2.43 15 6 N -0.92 -50.99 12.29 21.65 0.27 -50.72 15 7 Si 1.11 46.66 30.00 68.60 2.06 48.72 15 8 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 9 H -0.28 -11.40 7.11 99.48 0.71 -10.69 15 10 H -0.29 -12.51 7.11 99.48 0.71 -11.80 15 11 C 0.14 5.85 4.47 86.38 0.39 6.23 15 12 C 0.05 1.79 4.11 30.96 0.13 1.91 15 13 H 0.11 3.85 8.14 -2.39 -0.02 3.83 15 14 C 0.08 1.81 7.71 86.63 0.67 2.48 15 15 N -0.71 -17.33 6.40 -590.43 -3.78 -21.11 15 16 C 0.64 22.76 9.16 129.91 1.19 23.95 15 17 O -0.58 -24.91 18.04 19.64 0.35 -24.56 15 18 O -0.34 -13.36 9.72 -47.32 -0.46 -13.82 15 19 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 15 20 H 0.04 1.75 7.13 -2.39 -0.02 1.73 15 21 H 0.04 1.64 8.00 -2.39 -0.02 1.62 15 22 H 0.26 14.59 7.46 -92.71 -0.69 13.90 15 23 H 0.04 1.75 8.07 -2.39 -0.02 1.73 15 24 H 0.09 3.79 5.74 -2.38 -0.01 3.78 15 25 H 0.11 2.19 7.73 -2.39 -0.02 2.17 15 26 H 0.13 2.04 8.14 -2.39 -0.02 2.02 15 27 H 0.45 7.81 8.96 -92.71 -0.83 6.98 15 Total: -1.00 -67.64 235.96 1.93 -65.72 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.43 Total: 7.69 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 4.91 Total: 20.13 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -5.37 Total: -103.87 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.11 Total: -38.38 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.06 Total: 48.72 kcal Total: -67.64 1.93 -65.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968128.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.255 kcal (2) G-P(sol) polarization free energy of solvation -67.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds