Wall clock time and date at job start Mon Mar 30 2020 03:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00275 * 2 1 4 4 H 1.08000 * 120.00138 * 203.16444 * 3 2 1 5 5 C 1.38811 * 119.99877 * 23.16035 * 3 2 1 6 6 N 1.31611 * 120.00087 * 13.56429 * 5 3 2 7 7 Si 1.86797 * 119.99851 * 193.56762 * 5 3 2 8 8 H 1.48497 * 109.47341 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47451 * 120.00058 * 7 5 3 10 10 H 1.48507 * 109.46829 * 240.00010 * 7 5 3 11 11 C 1.46498 * 119.99848 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47177 * 90.00082 * 11 2 1 13 13 H 1.08996 * 110.46580 * 61.17556 * 12 11 2 14 14 C 1.54093 * 110.52124 * 183.96157 * 12 11 2 15 15 N 1.47084 * 103.77782 * 118.62861 * 14 12 11 16 16 C 1.34004 * 108.88438 * 359.97438 * 15 14 12 17 17 O 1.21514 * 123.07197 * 180.02562 * 16 15 14 18 18 O 1.33772 * 113.85658 * 0.02562 * 16 15 14 19 19 H 1.09005 * 109.47138 * 275.15301 * 1 2 3 20 20 H 1.09003 * 109.47036 * 35.14934 * 1 2 3 21 21 H 1.08998 * 109.47535 * 155.15416 * 1 2 3 22 22 H 0.97004 * 120.00195 * 180.02562 * 6 5 3 23 23 H 1.09001 * 109.47324 * 329.99810 * 11 2 1 24 24 H 1.09005 * 109.47035 * 209.99359 * 11 2 1 25 25 H 1.09007 * 110.55846 * 237.20068 * 14 12 11 26 26 H 1.09006 * 110.56487 * 359.90210 * 14 12 11 27 27 H 0.97006 * 125.56019 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1644 1.2236 -0.3679 5 6 1.5396 2.3396 0.4728 6 7 0.4205 2.2577 1.1606 7 14 2.3069 4.0084 0.1328 8 1 3.5531 3.8291 -0.6546 9 1 1.3511 4.8453 -0.6362 10 1 2.6268 4.6775 1.4194 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 1 3.0587 -0.9703 -1.9664 14 6 3.1348 -3.0911 -1.4733 15 7 2.1741 -3.9408 -2.1934 16 6 1.1094 -3.2008 -2.5320 17 8 0.1563 -3.6488 -3.1381 18 8 1.1919 -1.9239 -2.1420 19 1 -0.3634 0.0923 1.0236 20 1 -0.3633 0.8403 -0.5917 21 1 -0.3634 -0.9325 -0.4318 22 1 -0.0061 3.0639 1.4907 23 1 1.6084 -2.0286 0.5130 24 1 3.1499 -1.1386 0.5133 25 1 4.0802 -3.0394 -2.0134 26 1 3.2934 -3.4619 -0.4606 27 1 2.2917 -4.8833 -2.3904 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685968129.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:16 Heat of formation + Delta-G solvation = -73.676139 kcal Electronic energy + Delta-G solvation = -13159.400156 eV Core-core repulsion = 10724.452345 eV Total energy + Delta-G solvation = -2434.947811 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.42500 -38.54809 -37.16736 -35.59564 -33.56603 -31.11317 -27.93957 -26.94108 -23.97293 -23.38120 -22.39847 -19.20781 -18.51804 -17.86659 -17.40764 -16.87565 -15.77798 -15.61404 -15.32278 -15.00014 -14.55880 -14.22391 -13.66501 -13.24994 -13.03159 -12.74226 -12.42754 -12.24387 -11.98330 -11.87474 -11.76122 -11.62556 -10.64875 -10.26524 -8.79448 -7.81302 -5.32451 1.48599 1.51253 1.60610 1.69471 1.90171 2.51983 2.77124 3.26912 3.36275 3.86040 3.97320 4.03475 4.47844 4.68488 4.73168 4.87781 4.92583 5.05568 5.33748 5.62984 5.68475 5.89423 6.31919 6.40454 7.13303 7.13866 7.84466 8.31417 9.22440 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.059757 B = 0.009208 C = 0.008761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.455071 B = 3040.074160 C = 3195.149432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.613 5.613 3 C -0.264 4.264 4 H 0.086 0.914 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.970 3.030 8 H -0.258 1.258 9 H -0.299 1.299 10 H -0.292 1.292 11 C 0.140 3.860 12 C 0.043 3.957 13 H 0.112 0.888 14 C 0.082 3.918 15 N -0.716 5.716 16 C 0.633 3.367 17 O -0.589 6.589 18 O -0.342 6.342 19 H 0.005 0.995 20 H 0.007 0.993 21 H 0.018 0.982 22 H 0.247 0.753 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.128 0.872 26 H 0.121 0.879 27 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.891 -10.504 -3.220 14.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.335 5.335 3 C -0.394 4.394 4 H 0.104 0.896 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.798 3.202 8 H -0.182 1.182 9 H -0.227 1.227 10 H -0.219 1.219 11 C 0.013 3.987 12 C -0.015 4.015 13 H 0.130 0.870 14 C -0.042 4.042 15 N -0.390 5.390 16 C 0.386 3.614 17 O -0.479 6.479 18 O -0.251 6.251 19 H 0.023 0.977 20 H 0.026 0.974 21 H 0.036 0.964 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.116 0.884 25 H 0.146 0.854 26 H 0.139 0.861 27 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 9.154 -10.217 -3.423 14.139 hybrid contribution -0.164 0.769 -0.111 0.794 sum 8.991 -9.447 -3.533 13.512 Atomic orbital electron populations 1.20417 0.83469 0.95219 0.96975 1.44039 1.01803 1.01932 1.85749 1.19679 0.98918 0.86446 1.34323 0.89625 1.25875 0.98618 1.02250 0.98448 1.70258 1.21578 1.27583 1.39443 0.85161 0.78069 0.79836 0.77091 1.18198 1.22673 1.21908 1.21381 0.98232 0.87404 0.91678 1.25166 0.80766 0.98664 0.96924 0.86976 1.23062 0.93369 0.86937 1.00824 1.45855 1.18912 1.14292 1.59914 1.19003 0.83531 0.80735 0.78095 1.90967 1.36629 1.73277 1.47035 1.87409 1.42297 1.25990 1.69412 0.97655 0.97422 0.96353 0.94414 0.92988 0.88351 0.85449 0.86061 0.70991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.72 8.72 127.77 1.11 10.84 15 2 N -0.61 -29.93 2.87 -726.92 -2.09 -32.01 15 3 C -0.26 -13.81 9.65 84.03 0.81 -13.00 15 4 H 0.09 4.11 7.87 -2.91 -0.02 4.09 15 5 C -0.06 -3.16 5.09 84.86 0.43 -2.73 15 6 N -0.94 -56.44 10.75 21.65 0.23 -56.20 15 7 Si 0.97 44.27 29.57 68.60 2.03 46.29 15 8 H -0.26 -10.80 7.11 99.48 0.71 -10.10 15 9 H -0.30 -14.05 7.11 99.48 0.71 -13.34 15 10 H -0.29 -13.29 7.11 99.48 0.71 -12.58 15 11 C 0.14 4.86 5.22 86.38 0.45 5.31 15 12 C 0.04 1.23 4.13 30.97 0.13 1.36 15 13 H 0.11 3.20 8.14 -2.39 -0.02 3.18 15 14 C 0.08 1.36 7.71 86.64 0.67 2.03 15 15 N -0.72 -15.39 6.40 -590.41 -3.78 -19.17 15 16 C 0.63 22.08 9.16 129.91 1.19 23.27 15 17 O -0.59 -25.41 18.04 19.64 0.35 -25.06 15 18 O -0.34 -13.17 9.68 -47.32 -0.46 -13.63 15 19 H 0.01 0.30 7.33 -2.38 -0.02 0.28 15 20 H 0.01 0.41 7.37 -2.39 -0.02 0.39 15 21 H 0.02 0.88 7.25 -2.39 -0.02 0.87 15 22 H 0.25 14.38 8.31 -92.71 -0.77 13.61 15 23 H 0.05 1.75 8.07 -2.39 -0.02 1.73 15 24 H 0.10 2.94 8.04 -2.38 -0.02 2.92 15 25 H 0.13 1.23 8.14 -2.38 -0.02 1.21 15 26 H 0.12 1.40 7.73 -2.38 -0.02 1.39 15 27 H 0.45 6.74 8.96 -92.70 -0.83 5.91 15 Total: -1.00 -74.58 235.53 1.44 -73.14 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: 0.35 Total: -0.45 kcal Atomic # 6 Polarization: 22.29 SS G_CDS: 4.79 Total: 27.08 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -5.63 Total: -107.38 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.10 Total: -38.69 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -74.58 1.44 -73.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968129.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.533 kcal (2) G-P(sol) polarization free energy of solvation -74.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds