Wall clock time and date at job start Mon Mar 30 2020 02:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99793 * 2 1 4 4 H 1.48500 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47123 * 300.00146 * 3 2 1 6 6 H 1.48493 * 109.47095 * 60.00283 * 3 2 1 7 7 C 1.37874 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00307 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47526 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.82025 * 59.29728 * 10 9 7 12 12 O 1.20833 * 119.99747 * 95.57396 * 11 10 9 13 13 O 1.34230 * 120.00262 * 275.29018 * 11 10 9 14 14 C 1.54377 * 109.90746 * 180.23597 * 10 9 7 15 15 C 1.55306 * 102.25557 * 98.20046 * 14 10 9 16 16 C 1.54952 * 100.94184 * 34.13113 * 15 14 10 17 17 O 1.43246 * 109.82898 * 298.41333 * 10 9 7 18 18 H 0.96994 * 120.00531 * 359.97438 * 1 2 3 19 19 H 1.09008 * 109.47076 * 60.00661 * 9 7 2 20 20 H 1.08997 * 109.47606 * 300.00701 * 9 7 2 21 21 H 0.96699 * 116.99771 * 180.27188 * 13 11 10 22 22 H 1.08997 * 110.84908 * 216.38719 * 14 10 9 23 23 H 1.08998 * 110.84816 * 340.01022 * 14 10 9 24 24 H 1.08998 * 111.12462 * 276.21467 * 15 14 10 25 25 H 1.08995 * 111.16631 * 152.06501 * 15 14 10 26 26 H 1.08999 * 110.31158 * 204.64339 * 16 15 14 27 27 H 1.08997 * 110.39040 * 82.51244 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 3.1276 -3.5801 1.2184 12 8 2.8494 -4.2132 2.2093 13 8 4.2256 -2.8081 1.2016 14 6 1.4837 -5.0048 -0.0065 15 6 1.5140 -5.3944 -1.5096 16 6 2.8954 -4.8331 -1.9311 17 8 3.0485 -3.6147 -1.1857 18 1 -0.4850 0.8399 0.0004 19 1 0.6242 -2.5568 -0.8904 20 1 0.6247 -2.5571 0.8896 21 1 4.7624 -2.7908 2.0058 22 1 2.0036 -5.7485 0.5974 23 1 0.4586 -4.8709 0.3389 24 1 0.7080 -4.9069 -2.0581 25 1 1.4742 -6.4762 -1.6367 26 1 2.9093 -4.6261 -3.0012 27 1 3.6864 -5.5369 -1.6722 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691816872.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:07 Heat of formation + Delta-G solvation = -144.884587 kcal Electronic energy + Delta-G solvation = -13449.942560 eV Core-core repulsion = 10979.614168 eV Total energy + Delta-G solvation = -2470.328392 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.12902 -38.19339 -35.41841 -33.21582 -31.68752 -30.64570 -26.68226 -23.75325 -22.74989 -21.52407 -19.40435 -17.40043 -16.76545 -16.08694 -15.61368 -15.06842 -14.55241 -14.26660 -13.32835 -12.80328 -12.51678 -12.00136 -11.59754 -11.50010 -11.28099 -11.04716 -10.86445 -10.78424 -10.63583 -10.41664 -10.06101 -9.70648 -9.07987 -8.76047 -8.37885 -5.99903 -3.99991 2.91537 3.34883 3.42009 3.49335 3.78133 4.24513 4.50473 4.87336 5.21594 5.34633 5.39524 5.60535 5.69672 5.94144 6.02775 6.13709 6.19962 6.33121 6.56962 7.11876 7.24827 7.49504 7.67221 8.01270 8.32688 8.66073 9.09018 9.63707 11.11973 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.037447 B = 0.012971 C = 0.011717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.545396 B = 2158.124592 C = 2389.113664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.512 4.512 8 H 0.076 0.924 9 C 0.024 3.976 10 C 0.125 3.875 11 C 0.502 3.498 12 O -0.540 6.540 13 O -0.489 6.489 14 C -0.137 4.137 15 C -0.154 4.154 16 C 0.043 3.957 17 O -0.341 6.341 18 H 0.260 0.740 19 H 0.041 0.959 20 H 0.033 0.967 21 H 0.391 0.609 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.519 -8.676 -1.844 9.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.094 0.906 9 C -0.012 4.012 10 C 0.084 3.916 11 C 0.346 3.654 12 O -0.431 6.431 13 O -0.297 6.297 14 C -0.175 4.175 15 C -0.191 4.191 16 C -0.034 4.034 17 O -0.260 6.260 18 H 0.069 0.931 19 H 0.060 0.940 20 H 0.051 0.949 21 H 0.247 0.753 22 H 0.096 0.904 23 H 0.110 0.890 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.199 -8.552 -2.010 9.737 hybrid contribution 0.572 0.814 0.633 1.180 sum 4.771 -7.738 -1.377 9.194 Atomic orbital electron populations 1.69965 1.06083 1.26619 1.51263 1.25000 0.94823 0.99384 0.95345 0.86471 0.80388 0.83445 0.77389 1.19448 1.21068 1.21218 1.21360 0.94110 0.89865 1.49716 0.90623 1.19499 0.92342 0.90435 0.98967 1.22373 0.89301 0.98885 0.80995 1.23824 0.78551 0.73230 0.89768 1.90618 1.71852 1.44937 1.35664 1.84778 1.36640 1.63987 1.44283 1.23123 1.02293 0.95346 0.96704 1.23273 0.98600 1.01314 0.95924 1.23399 0.95642 0.87251 0.97080 1.88670 1.66692 1.36139 1.34450 0.93060 0.94048 0.94898 0.75303 0.90399 0.88996 0.89822 0.90267 0.89773 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 15 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 6 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 7 C -0.51 -14.57 8.20 -34.44 -0.28 -14.85 15 8 H 0.08 2.16 6.25 -52.48 -0.33 1.84 15 9 C 0.02 0.63 4.11 -27.88 -0.11 0.52 15 10 C 0.13 2.71 0.85 -91.05 -0.08 2.64 15 11 C 0.50 10.97 6.64 36.00 0.24 11.21 15 12 O -0.54 -12.16 16.67 -18.76 -0.31 -12.47 15 13 O -0.49 -9.77 11.71 -44.19 -0.52 -10.28 15 14 C -0.14 -2.40 5.75 -24.79 -0.14 -2.54 15 15 C -0.15 -2.21 7.16 -24.48 -0.18 -2.38 15 16 C 0.04 0.68 7.78 38.19 0.30 0.97 15 17 O -0.34 -7.24 10.16 -48.12 -0.49 -7.73 15 18 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 19 H 0.04 1.11 8.14 -51.92 -0.42 0.68 15 20 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.39 5.58 9.10 45.56 0.41 6.00 15 22 H 0.08 1.30 7.35 -51.93 -0.38 0.92 15 23 H 0.09 1.58 7.82 -51.93 -0.41 1.18 15 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 LS Contribution 236.31 15.07 3.56 3.56 Total: -1.00 -33.08 236.31 -4.77 -37.85 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -2.37 Total: 1.10 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.35 Total: -2.94 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.17 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.32 Total: -30.48 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -33.08 -4.77 -37.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691816872.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.035 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds