Wall clock time and date at job start Mon Mar 30 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00012 * 2 1 4 4 H 1.48497 * 109.47223 * 239.99572 * 3 2 1 5 5 H 1.48503 * 109.46746 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47337 * 119.99483 * 3 2 1 7 7 C 1.38955 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00093 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00281 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99665 * 5.12153 * 10 9 7 12 12 C 1.50698 * 120.00081 * 185.13024 * 10 9 7 13 13 H 1.08996 * 109.47539 * 51.24265 * 12 10 9 14 14 O 1.42903 * 109.46783 * 171.24511 * 12 10 9 15 15 N 1.46301 * 113.99781 * 204.48788 * 14 12 10 16 16 C 1.52999 * 109.46790 * 291.24049 * 12 10 9 17 17 C 1.52995 * 117.49807 * 134.35099 * 16 12 10 18 18 C 1.52994 * 117.50177 * 65.69100 * 16 12 10 19 19 H 0.96999 * 120.00578 * 0.02562 * 1 2 3 20 20 H 0.96999 * 120.00356 * 0.02562 * 9 7 2 21 21 H 1.00897 * 110.99971 * 184.66027 * 15 14 12 22 22 H 1.00899 * 110.99844 * 308.61148 * 15 14 12 23 23 H 1.09002 * 115.54858 * 280.01781 * 16 12 10 24 24 H 1.09007 * 117.49889 * 359.97438 * 17 16 12 25 25 H 1.08997 * 117.50142 * 145.01895 * 17 16 12 26 26 H 1.08994 * 117.50556 * 214.97933 * 18 16 12 27 27 H 1.09001 * 117.49569 * 359.97072 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2830 2.7464 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2067 -3.5599 0.0943 12 6 1.2484 -4.8603 -0.1162 13 1 0.5738 -4.8163 -0.9712 14 8 2.1785 -5.9299 -0.2978 15 7 1.6142 -7.1018 -0.9678 16 6 0.4391 -5.0993 1.1601 17 6 -1.0117 -5.5581 1.0011 18 6 -0.7061 -4.1309 1.4623 19 1 -0.4851 0.8400 -0.0004 20 1 0.3535 -2.3907 -0.0002 21 1 2.2846 -7.8549 -1.0047 22 1 0.7609 -7.3990 -0.5188 23 1 1.0017 -5.4933 2.0066 24 1 -1.3899 -5.6892 -0.0128 25 1 -1.4039 -6.2535 1.7432 26 1 -0.8973 -3.8879 2.5074 27 1 -0.8827 -3.3231 0.7520 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708819950.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:41 Heat of formation + Delta-G solvation = -34.722713 kcal Electronic energy + Delta-G solvation = -12988.899226 eV Core-core repulsion = 10555.640562 eV Total energy + Delta-G solvation = -2433.258664 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.70563 -38.36807 -36.91695 -35.91554 -33.29875 -31.23669 -28.57929 -26.44707 -23.33519 -22.52324 -21.11814 -19.90853 -18.52425 -17.74673 -16.86378 -16.61930 -16.17324 -15.85865 -15.61470 -14.78952 -14.77954 -13.75390 -13.54425 -13.25679 -12.93499 -12.57730 -12.28289 -12.12033 -11.94825 -11.56928 -11.49413 -11.21177 -10.24944 -10.07679 -9.96822 -8.50444 -6.00088 1.38039 1.40898 1.50185 1.62315 1.90624 2.31744 2.72301 3.14707 3.40183 3.59664 3.84869 3.94192 4.02788 4.37184 4.48581 4.65212 4.78656 4.97457 5.13675 5.22726 5.37593 5.83234 5.96291 6.21474 6.54436 7.06078 7.45853 8.00868 8.66577 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.046959 B = 0.010069 C = 0.008692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.122924 B = 2780.096812 C = 3220.739303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.006 4.006 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.266 1.266 6 H -0.272 1.272 7 C -0.344 4.344 8 H 0.078 0.922 9 N -0.554 5.554 10 C 0.439 3.561 11 O -0.630 6.630 12 C 0.126 3.874 13 H 0.095 0.905 14 O -0.242 6.242 15 N -0.663 5.663 16 C -0.198 4.198 17 C -0.136 4.136 18 C -0.180 4.180 19 H 0.281 0.719 20 H 0.399 0.601 21 H 0.376 0.624 22 H 0.354 0.646 23 H 0.105 0.895 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.105 0.895 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 -9.482 1.236 11.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.206 4.206 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.197 1.197 7 C -0.473 4.473 8 H 0.096 0.904 9 N -0.193 5.193 10 C 0.225 3.775 11 O -0.517 6.517 12 C 0.063 3.937 13 H 0.113 0.887 14 O -0.254 6.254 15 N -0.235 5.235 16 C -0.217 4.217 17 C -0.173 4.173 18 C -0.217 4.217 19 H 0.091 0.909 20 H 0.237 0.763 21 H 0.192 0.808 22 H 0.166 0.834 23 H 0.123 0.877 24 H 0.130 0.870 25 H 0.143 0.857 26 H 0.123 0.877 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.306 -8.855 0.695 10.346 hybrid contribution 0.099 0.300 0.932 0.984 sum -5.206 -8.555 1.627 10.146 Atomic orbital electron populations 1.69644 1.06767 1.29728 1.49180 1.26058 0.96620 1.02304 0.95664 0.84955 0.77826 0.76333 0.79007 1.19629 1.19018 1.19735 1.19696 0.92844 0.83877 1.50886 0.90392 1.41922 1.09500 1.03980 1.63944 1.20443 0.87848 0.85811 0.83373 1.90488 1.16452 1.87889 1.56876 1.21131 0.90369 0.84858 0.97336 0.88713 1.90808 1.31584 1.22060 1.80906 1.64420 1.08693 1.03213 1.47169 1.22691 0.91821 1.08443 0.98739 1.23256 0.93379 0.96317 1.04302 1.22994 1.01456 0.94133 1.03114 0.90921 0.76345 0.80839 0.83447 0.87720 0.86987 0.85667 0.87695 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.81 13.05 21.66 0.28 -48.53 15 2 C -0.01 -0.30 5.50 84.93 0.47 0.16 15 3 Si 1.00 43.01 29.55 68.60 2.03 45.04 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 5 H -0.27 -10.65 7.11 99.48 0.71 -9.95 15 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 7 C -0.34 -20.10 9.68 84.04 0.81 -19.29 15 8 H 0.08 4.87 7.17 -2.91 -0.02 4.85 15 9 N -0.55 -29.72 5.04 -306.97 -1.55 -31.26 15 10 C 0.44 23.11 7.06 87.66 0.62 23.73 15 11 O -0.63 -38.95 16.11 15.81 0.25 -38.70 15 12 C 0.13 4.97 2.92 29.85 0.09 5.05 15 13 H 0.10 3.45 7.91 -2.39 -0.02 3.43 15 14 O -0.24 -9.59 11.16 -31.27 -0.35 -9.94 15 15 N -0.66 -17.48 10.80 37.02 0.40 -17.08 15 16 C -0.20 -6.30 5.32 -10.80 -0.06 -6.35 15 17 C -0.14 -3.00 10.18 30.62 0.31 -2.69 15 18 C -0.18 -5.45 9.58 30.61 0.29 -5.16 15 19 H 0.28 13.97 8.31 -92.71 -0.77 13.20 15 20 H 0.40 19.90 5.24 -92.71 -0.49 19.41 15 21 H 0.38 7.87 9.25 -89.70 -0.83 7.04 15 22 H 0.35 7.06 9.02 -89.69 -0.81 6.25 15 23 H 0.10 3.41 8.14 -2.39 -0.02 3.39 15 24 H 0.11 2.17 8.09 -2.38 -0.02 2.15 15 25 H 0.13 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.10 2.99 8.14 -2.39 -0.02 2.97 15 27 H 0.08 2.94 5.91 -2.39 -0.01 2.93 15 Total: -1.00 -71.88 242.59 2.70 -69.19 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -0.91 Total: 35.83 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 2.53 Total: -4.54 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -0.86 Total: -96.87 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.09 Total: -48.64 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -71.88 2.70 -69.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708819950.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.464 kcal (2) G-P(sol) polarization free energy of solvation -71.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds