Wall clock time and date at job start Mon Mar 30 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86807 * 119.99770 * 2 1 4 4 H 1.48499 * 109.46969 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47051 * 299.99710 * 3 2 1 6 6 H 1.48493 * 109.46969 * 60.00051 * 3 2 1 7 7 C 1.38952 * 120.00504 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00058 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99558 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99758 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00225 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99938 * 179.97438 * 10 9 7 13 13 H 1.08999 * 109.47487 * 305.00051 * 12 10 9 14 14 O 1.42907 * 109.47181 * 185.00291 * 12 10 9 15 15 N 1.46290 * 113.99950 * 85.00191 * 14 12 10 16 16 C 1.53003 * 109.47004 * 65.00431 * 12 10 9 17 17 C 1.53001 * 117.51964 * 116.28325 * 16 12 10 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 12 19 19 H 0.96997 * 119.99887 * 0.02562 * 1 2 3 20 20 H 0.96995 * 120.00007 * 0.02562 * 9 7 2 21 21 H 1.00903 * 110.99831 * 179.97438 * 15 14 12 22 22 H 1.00897 * 111.00125 * 303.95286 * 15 14 12 23 23 H 1.09002 * 115.54973 * 330.58108 * 16 12 10 24 24 H 1.09001 * 117.49733 * 214.97413 * 17 16 12 25 25 H 1.08995 * 117.49577 * 359.97438 * 17 16 12 26 26 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 27 27 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5578 -0.0021 12 6 1.2440 -4.8629 -0.0010 13 1 0.5528 -4.8831 0.8416 14 8 2.1683 -5.9465 0.1152 15 7 2.5426 -6.2642 1.4933 16 6 0.4596 -4.9995 -1.3075 17 6 0.8418 -6.1468 -2.2449 18 6 -0.4657 -6.2094 -1.4528 19 1 -0.4850 0.8400 -0.0004 20 1 0.3535 -2.3907 -0.0005 21 1 3.1945 -7.0339 1.5226 22 1 2.9183 -5.4536 1.9620 23 1 0.1386 -4.0628 -1.7633 24 1 0.7724 -5.9648 -3.3174 25 1 1.6525 -6.8042 -1.9311 26 1 -0.5154 -6.9082 -0.6177 27 1 -1.3954 -6.0685 -2.0042 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708819952.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:50 Heat of formation + Delta-G solvation = -38.705363 kcal Electronic energy + Delta-G solvation = -12932.672392 eV Core-core repulsion = 10499.241027 eV Total energy + Delta-G solvation = -2433.431365 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.63177 -38.41806 -36.66827 -35.88019 -33.35595 -31.08293 -28.87553 -26.36925 -23.21380 -22.35642 -20.92552 -20.06335 -18.16020 -17.91852 -17.29337 -16.75091 -15.90005 -15.74988 -15.53520 -15.00143 -14.66486 -13.64047 -13.52400 -12.99167 -12.80723 -12.47958 -12.43135 -12.25073 -12.13537 -11.57178 -11.44457 -11.08221 -10.44762 -10.07967 -9.80696 -8.51328 -6.01454 1.33445 1.40592 1.54652 1.75473 1.96097 2.27113 2.84928 3.14093 3.15300 3.76762 3.95158 4.06221 4.13873 4.41561 4.50086 4.61307 4.83688 5.01133 5.25045 5.35177 5.36419 5.84648 5.94510 6.04708 6.52212 7.05474 7.46389 8.00570 8.65616 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.045833 B = 0.009541 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.773373 B = 2934.066792 C = 3289.893723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.995 3.005 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.558 5.558 10 C 0.414 3.586 11 O -0.632 6.632 12 C 0.127 3.873 13 H 0.097 0.903 14 O -0.228 6.228 15 N -0.663 5.663 16 C -0.176 4.176 17 C -0.164 4.164 18 C -0.140 4.140 19 H 0.280 0.720 20 H 0.398 0.602 21 H 0.374 0.626 22 H 0.342 0.658 23 H 0.110 0.890 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 -8.546 -0.626 8.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.818 3.182 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.195 5.195 10 C 0.202 3.798 11 O -0.520 6.520 12 C 0.064 3.936 13 H 0.115 0.885 14 O -0.239 6.239 15 N -0.231 5.231 16 C -0.196 4.196 17 C -0.201 4.201 18 C -0.177 4.177 19 H 0.090 0.910 20 H 0.232 0.768 21 H 0.188 0.812 22 H 0.151 0.849 23 H 0.128 0.872 24 H 0.124 0.876 25 H 0.112 0.888 26 H 0.122 0.878 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.604 -8.699 -0.678 9.105 hybrid contribution 1.083 1.369 0.012 1.746 sum -1.521 -7.330 -0.665 7.515 Atomic orbital electron populations 1.69672 1.06859 1.29536 1.49446 1.26076 0.96556 1.02449 0.95800 0.84845 0.77935 0.76866 0.78512 1.19908 1.19417 1.19324 1.19731 0.92736 0.83972 1.50486 0.90376 1.41924 1.09392 1.04569 1.63621 1.21496 0.88487 0.86800 0.83051 1.90471 1.15840 1.88080 1.57625 1.21117 0.89643 0.83528 0.99267 0.88522 1.90621 1.64776 1.50504 1.18040 1.64567 1.50978 1.11053 0.96470 1.22233 1.04848 0.96041 0.96487 1.22896 0.99649 0.99996 0.97575 1.23076 0.94317 0.97526 1.02777 0.91018 0.76804 0.81205 0.84862 0.87197 0.87626 0.88830 0.87824 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.99 13.05 21.66 0.28 -48.71 15 2 C -0.01 -0.44 5.50 84.93 0.47 0.03 15 3 Si 1.00 42.63 29.55 68.60 2.03 44.66 15 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 6 H -0.27 -10.92 7.11 99.48 0.71 -10.22 15 7 C -0.34 -19.46 9.68 84.04 0.81 -18.65 15 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 15 9 N -0.56 -29.18 5.16 -306.98 -1.59 -30.77 15 10 C 0.41 20.62 7.04 87.66 0.62 21.24 15 11 O -0.63 -36.32 16.08 15.90 0.26 -36.07 15 12 C 0.13 4.91 3.09 29.85 0.09 5.00 15 13 H 0.10 3.48 8.09 -2.39 -0.02 3.46 15 14 O -0.23 -8.57 9.51 -31.15 -0.30 -8.86 15 15 N -0.66 -20.65 10.76 37.02 0.40 -20.26 15 16 C -0.18 -5.85 5.70 -10.79 -0.06 -5.91 15 17 C -0.16 -4.67 9.87 30.59 0.30 -4.37 15 18 C -0.14 -3.46 10.24 30.60 0.31 -3.15 15 19 H 0.28 13.92 8.31 -92.71 -0.77 13.15 15 20 H 0.40 19.77 7.90 -92.71 -0.73 19.04 15 21 H 0.37 9.21 9.25 -89.69 -0.83 8.38 15 22 H 0.34 11.37 9.12 -89.70 -0.82 10.56 15 23 H 0.11 3.90 7.99 -2.39 -0.02 3.88 15 24 H 0.11 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.09 2.84 7.03 -2.39 -0.02 2.82 15 26 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15 27 H 0.12 2.37 8.14 -2.38 -0.02 2.35 15 Total: -1.00 -66.57 245.81 2.46 -64.10 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -1.16 Total: 41.71 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 2.54 Total: -5.81 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -0.90 Total: -99.73 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -0.04 Total: -44.93 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -66.57 2.46 -64.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708819952.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.398 kcal (2) G-P(sol) polarization free energy of solvation -66.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds