Wall clock time and date at job start Mon Mar 30 2020 02:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.80568 * 2 1 4 4 C 1.55001 * 110.90588 * 236.37131 * 2 1 3 5 5 O 1.44387 * 103.49099 * 204.74364 * 4 2 1 6 6 C 1.43746 * 106.97283 * 40.05955 * 5 4 2 7 7 C 1.50697 * 109.87399 * 93.06288 * 6 5 4 8 8 H 1.08007 * 119.99668 * 241.70268 * 7 6 5 9 9 C 1.37877 * 120.00478 * 61.70960 * 7 6 5 10 10 N 1.31516 * 119.99617 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00223 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47217 * 59.99834 * 11 9 7 13 13 H 1.48504 * 109.46846 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.46942 * 299.99503 * 11 9 7 15 15 C 1.50697 * 109.87491 * 214.06120 * 6 5 4 16 16 O 1.20833 * 119.99747 * 143.55300 * 15 6 5 17 17 O 1.34230 * 120.00262 * 323.26922 * 15 6 5 18 18 C 1.54099 * 107.29528 * 333.48538 * 6 5 4 19 19 H 1.08997 * 109.47360 * 182.17329 * 1 2 3 20 20 H 1.09001 * 109.47233 * 302.17549 * 1 2 3 21 21 H 1.08998 * 109.47048 * 62.17113 * 1 2 3 22 22 H 1.09000 * 110.62008 * 86.24557 * 4 2 1 23 23 H 1.08993 * 110.75185 * 323.30863 * 4 2 1 24 24 H 0.97003 * 120.00195 * 180.02562 * 10 9 7 25 25 H 0.96699 * 116.99771 * 180.27188 * 17 15 6 26 26 H 1.09003 * 110.48440 * 120.70346 * 18 6 5 27 27 H 1.08995 * 110.48724 * 243.34911 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0830 -0.8019 -1.2056 5 8 3.3944 -1.2135 -0.7633 6 6 3.2727 -1.5875 0.6193 7 6 3.0154 -3.0683 0.7286 8 1 2.0995 -3.4257 1.1757 9 6 3.9493 -3.9670 0.2581 10 7 5.0644 -3.5318 -0.2866 11 14 3.6306 -5.8026 0.3944 12 1 2.3936 -6.1470 -0.3517 13 1 4.7788 -6.5483 -0.1808 14 1 3.4659 -6.1716 1.8233 15 6 4.5360 -1.2310 1.3596 16 8 4.4766 -0.8325 2.4987 17 8 5.7275 -1.3616 0.7555 18 6 2.0832 -0.8012 1.2036 19 1 -0.3634 -1.0269 0.0390 20 1 -0.3634 0.5472 0.8698 21 1 -0.3633 0.4797 -0.9088 22 1 2.1576 -0.1661 -2.0878 23 1 1.4574 -1.6703 -1.4116 24 1 5.7213 -4.1640 -0.6180 25 1 6.5098 -1.1243 1.2720 26 1 1.3258 -1.4846 1.5875 27 1 2.4216 -0.1252 1.9888 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718400554.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:25 Heat of formation + Delta-G solvation = -138.343547 kcal Electronic energy + Delta-G solvation = -13684.356035 eV Core-core repulsion = 11214.311283 eV Total energy + Delta-G solvation = -2470.044752 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.31356 -37.59189 -34.61942 -33.01946 -32.28878 -29.39398 -25.74493 -24.87436 -22.84156 -20.17458 -19.11632 -17.12925 -16.53005 -15.86191 -14.90837 -14.32856 -14.03950 -13.64511 -13.23902 -12.76927 -12.46795 -11.97015 -11.67529 -11.21402 -10.96434 -10.65744 -10.51543 -10.48300 -10.35619 -9.97770 -9.79339 -9.58859 -9.24186 -8.62010 -8.14320 -6.08470 -4.35098 3.24948 3.30021 3.32032 3.71490 4.31162 4.58845 4.96358 5.27098 5.36827 5.45959 5.82679 6.02958 6.06336 6.23662 6.38642 6.47203 6.54992 6.63721 6.77836 6.92294 7.15827 7.70143 7.82462 7.95394 8.20822 8.70350 9.35250 9.47718 10.88006 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.032019 B = 0.016567 C = 0.013332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.262381 B = 1689.670660 C = 2099.635723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 H 0.071 0.929 4 C 0.057 3.943 5 O -0.349 6.349 6 C 0.241 3.759 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.076 3.924 10 N -0.817 5.817 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.275 1.275 15 C 0.510 3.490 16 O -0.572 6.572 17 O -0.459 6.459 18 C -0.130 4.130 19 H 0.058 0.942 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.265 0.735 25 H 0.364 0.636 26 H 0.077 0.923 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 3.888 -0.912 5.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 H 0.090 0.910 4 C -0.020 4.020 5 O -0.268 6.268 6 C 0.202 3.798 7 C -0.591 4.591 8 H 0.089 0.911 9 C -0.135 4.135 10 N -0.450 5.450 11 Si 0.722 3.278 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.200 1.200 15 C 0.357 3.643 16 O -0.467 6.467 17 O -0.262 6.262 18 C -0.167 4.167 19 H 0.077 0.923 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.217 0.783 26 H 0.095 0.905 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.218 3.828 -1.101 5.802 hybrid contribution 0.265 -0.952 0.586 1.149 sum -3.954 2.876 -0.515 4.916 Atomic orbital electron populations 1.21672 0.94910 1.01883 1.00846 1.22739 0.95718 0.99486 0.97240 0.91007 1.23302 0.87092 0.96334 0.95320 1.89091 1.25827 1.85421 1.26456 1.19251 0.85273 0.95039 0.80270 1.21151 1.05943 0.88190 1.43802 0.91111 1.25211 0.94826 0.99502 0.93970 1.70131 1.06762 1.34346 1.33757 0.86606 0.78113 0.84473 0.78590 1.19795 1.20935 1.20028 1.24164 0.85863 0.69066 0.85248 1.90514 1.88215 1.47190 1.20769 1.85144 1.15176 1.78978 1.46880 1.22990 0.97951 0.98440 0.97348 0.92309 0.93050 0.93080 0.91216 0.92731 0.92483 0.78297 0.90455 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.19 37.15 0.34 -1.64 15 2 C -0.13 -2.43 3.72 -88.61 -0.33 -2.76 15 3 H 0.07 1.25 8.14 -51.93 -0.42 0.82 15 4 C 0.06 1.16 7.11 38.21 0.27 1.44 15 5 O -0.35 -9.01 10.19 -47.69 -0.49 -9.49 15 6 C 0.24 6.22 0.70 -92.35 -0.06 6.15 15 7 C -0.55 -15.20 8.18 -34.44 -0.28 -15.49 15 8 H 0.07 1.88 7.34 -52.48 -0.39 1.50 15 9 C 0.08 2.07 5.26 -17.82 -0.09 1.97 15 10 N -0.82 -23.04 10.33 55.43 0.57 -22.46 15 11 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 15 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 15 C 0.51 13.53 6.76 36.00 0.24 13.77 15 16 O -0.57 -15.44 16.37 -18.76 -0.31 -15.75 15 17 O -0.46 -11.45 10.92 -44.09 -0.48 -11.93 15 18 C -0.13 -2.82 5.70 -25.20 -0.14 -2.97 15 19 H 0.06 0.87 8.11 -51.93 -0.42 0.45 15 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.05 1.11 8.05 -51.93 -0.42 0.70 15 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 25 H 0.36 7.15 9.10 45.56 0.41 7.56 15 26 H 0.08 1.63 7.10 -51.93 -0.37 1.26 15 27 H 0.07 1.58 6.80 -51.93 -0.35 1.22 15 LS Contribution 232.67 15.07 3.51 3.51 Total: -1.00 -31.54 232.67 -4.63 -36.17 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -2.36 Total: 3.66 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -0.06 Total: 0.49 kcal Atomic # 7 Polarization: -23.04 SS G_CDS: 0.57 Total: -22.46 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.27 Total: -37.17 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.54 -4.63 -36.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718400554.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.169 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds