Wall clock time and date at job start Mon Mar 30 2020 02:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 110.98772 * 2 1 4 4 C 1.54952 * 111.12566 * 235.75792 * 2 1 3 5 5 O 1.43648 * 105.13674 * 205.63207 * 4 2 1 6 6 C 1.43234 * 109.96923 * 24.42984 * 5 4 2 7 7 C 1.50703 * 109.90551 * 238.72773 * 6 5 4 8 8 H 1.08000 * 119.99582 * 118.17802 * 7 6 5 9 9 C 1.37866 * 120.00153 * 298.17995 * 7 6 5 10 10 N 1.31515 * 119.99907 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00119 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47153 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47271 * 120.00232 * 11 9 7 14 14 H 1.48500 * 109.47033 * 239.99709 * 11 9 7 15 15 C 1.50701 * 109.83099 * 117.80143 * 6 5 4 16 16 O 1.20826 * 119.99816 * 216.86870 * 15 6 5 17 17 O 1.34228 * 120.00023 * 36.86232 * 15 6 5 18 18 C 1.54381 * 107.59183 * 358.28758 * 6 5 4 19 19 H 1.09002 * 109.47153 * 295.79861 * 1 2 3 20 20 H 1.09001 * 109.46832 * 175.80051 * 1 2 3 21 21 H 1.09004 * 109.47261 * 55.80033 * 1 2 3 22 22 H 1.09000 * 110.30892 * 324.55080 * 4 2 1 23 23 H 1.08997 * 110.30627 * 86.71880 * 4 2 1 24 24 H 0.97000 * 120.00116 * 180.02562 * 10 9 7 25 25 H 0.96701 * 116.99484 * 179.97438 * 17 15 6 26 26 H 1.09004 * 110.85115 * 220.45824 * 18 6 5 27 27 H 1.08994 * 110.85332 * 96.82936 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9204 1.0178 0.0000 4 6 2.0884 -0.8133 -1.1948 5 8 3.3898 -1.2525 -0.7741 6 6 3.4510 -1.3008 0.6561 7 6 4.5512 -0.3989 1.1534 8 1 4.3149 0.4395 1.7918 9 6 5.8592 -0.6440 0.7932 10 7 6.1469 -1.6653 0.0161 11 14 7.2229 0.4744 1.4090 12 1 6.6406 1.5418 2.2614 13 1 8.1931 -0.3199 2.2048 14 1 7.9192 1.0898 0.2507 15 6 3.7058 -2.7153 1.1095 16 8 3.1762 -3.1330 2.1119 17 8 4.5209 -3.5111 0.3995 18 6 2.0898 -0.8143 1.1981 19 1 -0.3633 0.4473 0.9252 20 1 -0.3633 -1.0249 -0.0753 21 1 -0.3634 0.5776 -0.8500 22 1 1.4480 -1.6709 -1.4011 23 1 2.1702 -0.1800 -2.0782 24 1 7.0673 -1.8380 -0.2370 25 1 4.6538 -4.4101 0.7300 26 1 2.2255 -0.1760 2.0712 27 1 1.4406 -1.6584 1.4305 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718400561.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:31 Heat of formation + Delta-G solvation = -160.608370 kcal Electronic energy + Delta-G solvation = -13668.286050 eV Core-core repulsion = 11197.275823 eV Total energy + Delta-G solvation = -2471.010227 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.23589 -39.43008 -36.61398 -34.91753 -34.07928 -31.32361 -27.30524 -26.59365 -24.85172 -21.50119 -21.30732 -19.17163 -18.61410 -17.33328 -16.75192 -16.46637 -15.85814 -15.78766 -14.64819 -14.39094 -13.87517 -13.79815 -13.44721 -12.92692 -12.83613 -12.46712 -12.31607 -12.14078 -12.02076 -11.86957 -11.46139 -11.43197 -11.11643 -10.67920 -9.97579 -8.12367 -6.44770 1.39636 1.42464 1.54172 1.69245 2.38346 2.75234 3.05989 3.42793 3.76188 4.03975 4.32093 4.54363 4.58753 4.67672 4.89053 4.91797 5.04991 5.11746 5.19891 5.29725 5.49797 5.63841 5.90827 5.96933 6.41150 6.78629 7.28699 7.55988 8.84388 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.034798 B = 0.015547 C = 0.013102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.449076 B = 1800.601987 C = 2136.576915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.038 3.962 5 O -0.378 6.378 6 C 0.230 3.770 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.026 3.974 10 N -0.845 5.845 11 Si 0.961 3.039 12 H -0.264 1.264 13 H -0.280 1.280 14 H -0.275 1.275 15 C 0.490 3.510 16 O -0.589 6.589 17 O -0.467 6.467 18 C -0.120 4.120 19 H 0.067 0.933 20 H 0.055 0.945 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.087 0.913 24 H 0.265 0.735 25 H 0.382 0.618 26 H 0.076 0.924 27 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 2.296 -1.325 7.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.039 4.039 5 O -0.298 6.298 6 C 0.190 3.810 7 C -0.602 4.602 8 H 0.091 0.909 9 C -0.181 4.181 10 N -0.478 5.478 11 Si 0.785 3.215 12 H -0.188 1.188 13 H -0.206 1.206 14 H -0.200 1.200 15 C 0.337 3.663 16 O -0.485 6.485 17 O -0.272 6.272 18 C -0.158 4.158 19 H 0.086 0.914 20 H 0.074 0.926 21 H 0.096 0.904 22 H 0.071 0.929 23 H 0.105 0.895 24 H 0.074 0.926 25 H 0.238 0.762 26 H 0.095 0.905 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.373 2.418 -1.490 6.978 hybrid contribution 0.981 -0.382 0.709 1.269 sum -5.393 2.035 -0.781 5.817 Atomic orbital electron populations 1.21640 0.91622 1.02374 1.03094 1.22770 0.97789 0.99435 0.93305 0.89776 1.23588 0.85391 0.97101 0.97807 1.88748 1.31183 1.87811 1.22058 1.19501 0.95536 0.85199 0.80724 1.21366 0.91494 1.13658 1.33641 0.90883 1.26001 1.01309 0.96500 0.94313 1.70273 1.19590 1.26575 1.31398 0.85471 0.78652 0.79033 0.78311 1.18769 1.20566 1.19994 1.25083 0.72180 0.88547 0.80461 1.90479 1.53066 1.76222 1.28774 1.85109 1.61621 1.26548 1.53921 1.23009 0.93873 0.99656 0.99280 0.91432 0.92565 0.90419 0.92935 0.89476 0.92600 0.76229 0.90513 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.32 71.98 0.67 -2.59 15 2 C -0.11 -3.95 3.69 -9.34 -0.03 -3.99 15 3 H 0.08 2.91 8.14 -2.38 -0.02 2.89 15 4 C 0.04 1.46 7.26 72.65 0.53 1.98 15 5 O -0.38 -19.48 10.02 -136.91 -1.37 -20.85 15 6 C 0.23 11.86 0.78 -11.82 -0.01 11.85 15 7 C -0.57 -31.14 8.22 25.60 0.21 -30.93 15 8 H 0.07 3.90 7.48 -2.91 -0.02 3.88 15 9 C 0.03 1.45 5.26 84.65 0.45 1.89 15 10 N -0.85 -47.96 10.31 21.44 0.22 -47.74 15 11 Si 0.96 42.71 29.54 68.60 2.03 44.74 15 12 H -0.26 -11.31 7.11 99.48 0.71 -10.61 15 13 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 15 C 0.49 26.11 6.71 71.24 0.48 26.59 15 16 O -0.59 -31.92 16.65 21.96 0.37 -31.55 15 17 O -0.47 -23.51 10.89 -46.73 -0.51 -24.01 15 18 C -0.12 -5.12 5.21 31.85 0.17 -4.95 15 19 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 20 H 0.06 1.38 8.06 -2.39 -0.02 1.36 15 21 H 0.08 1.58 8.14 -2.38 -0.02 1.57 15 22 H 0.05 1.86 7.97 -2.39 -0.02 1.84 15 23 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 24 H 0.26 14.19 8.31 -92.71 -0.77 13.42 15 25 H 0.38 15.12 9.10 -74.06 -0.67 14.45 15 26 H 0.08 3.22 7.60 -2.38 -0.02 3.21 15 27 H 0.06 2.70 7.23 -2.39 -0.02 2.68 15 Total: -1.00 -66.80 233.50 3.69 -63.11 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.50 Total: 16.45 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 2.45 Total: -0.15 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.22 Total: -47.74 kcal Atomic # 8 Polarization: -74.90 SS G_CDS: -1.51 Total: -76.41 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -66.80 3.69 -63.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718400561.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.503 kcal (2) G-P(sol) polarization free energy of solvation -66.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds