Wall clock time and date at job start Mon Mar 30 2020 01:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46915 * 2 1 4 4 O 1.42893 * 109.47317 * 240.00018 * 2 1 3 5 5 C 1.53004 * 109.47263 * 119.99618 * 2 1 3 6 6 C 1.53619 * 110.63547 * 180.02562 * 5 2 1 7 7 N 1.44583 * 111.32577 * 241.52455 * 6 5 2 8 8 C 1.29279 * 119.65007 * 0.02562 * 7 6 5 9 9 C 1.41502 * 125.04843 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00365 * 180.02562 * 9 8 7 11 11 C 1.40131 * 119.99863 * 359.74918 * 9 8 7 12 12 N 1.30644 * 120.00074 * 0.27932 * 11 9 8 13 13 Si 1.86803 * 119.99972 * 180.27720 * 11 9 8 14 14 H 1.48491 * 109.47369 * 60.00364 * 13 11 9 15 15 H 1.48504 * 109.47032 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46993 * 300.00160 * 13 11 9 17 17 S 1.76745 * 109.90550 * 0.26770 * 8 7 6 18 18 H 1.08993 * 109.47650 * 299.99806 * 1 2 3 19 19 H 1.09000 * 109.47161 * 60.00197 * 1 2 3 20 20 H 1.09006 * 109.46915 * 179.97438 * 1 2 3 21 21 H 0.96702 * 114.00408 * 299.99733 * 4 2 1 22 22 H 1.09001 * 110.56825 * 302.93214 * 5 2 1 23 23 H 1.09006 * 109.11783 * 121.03642 * 6 5 2 24 24 H 1.08991 * 109.03619 * 1.96323 * 6 5 2 25 25 H 0.97005 * 120.00011 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5759 -0.7362 1.2766 7 7 4.0891 -2.0876 1.2499 8 6 3.2659 -3.0836 1.2080 9 6 3.6415 -4.4475 1.1779 10 1 2.8832 -5.2158 1.1430 11 6 4.9974 -4.8013 1.1876 12 7 5.9146 -3.8719 1.2300 13 14 5.4933 -6.6016 1.1401 14 1 4.9684 -7.2271 -0.1002 15 1 6.9744 -6.7077 1.1598 16 1 4.9315 -7.3012 2.3234 17 16 1.6018 -2.4884 1.1855 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.7211 -1.5952 -1.2329 22 1 1.6446 -0.2523 2.1504 23 1 3.9217 -0.2410 2.1840 24 1 3.9522 -0.1943 0.4091 25 1 6.8532 -4.1168 1.2370 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725579261.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:10 Heat of formation + Delta-G solvation = -67.353756 kcal Electronic energy + Delta-G solvation = -11106.018165 eV Core-core repulsion = 9016.378722 eV Total energy + Delta-G solvation = -2089.639443 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 201.056 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.24052 -37.24632 -35.08500 -32.77863 -30.43444 -27.95260 -24.89274 -22.83259 -21.77867 -18.72922 -17.91247 -17.38720 -16.90986 -16.26870 -15.69840 -15.05606 -14.37831 -14.20503 -13.72040 -13.24304 -12.99357 -12.91664 -12.67837 -12.39418 -12.11821 -11.85681 -11.84572 -11.48176 -10.97401 -10.63484 -9.27085 -8.53538 -8.33486 -6.77235 1.01915 1.38782 1.44702 1.56171 1.70611 1.98514 2.28878 3.22067 3.36513 3.72290 3.83822 4.17251 4.32119 4.35156 4.63043 4.82712 4.84039 4.93593 5.06877 5.25073 5.26349 6.10091 6.48815 6.63639 6.79906 7.99573 8.47603 Molecular weight = 201.06amu Principal moments of inertia in cm(-1) A = 0.066090 B = 0.010477 C = 0.009962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.565231 B = 2671.825642 C = 2810.084843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.121 3.879 3 H 0.121 0.879 4 O -0.576 6.576 5 C -0.096 4.096 6 C 0.066 3.934 7 N -0.629 5.629 8 C 0.295 3.705 9 C -0.466 4.466 10 H 0.092 0.908 11 C 0.034 3.966 12 N -0.776 5.776 13 Si 0.996 3.004 14 H -0.256 1.256 15 H -0.270 1.270 16 H -0.257 1.257 17 S -0.324 6.324 18 H 0.081 0.919 19 H 0.077 0.923 20 H 0.054 0.946 21 H 0.379 0.621 22 H 0.116 0.884 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.230 2.840 -0.821 6.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.060 3.940 3 H 0.138 0.862 4 O -0.384 6.384 5 C -0.228 4.228 6 C -0.068 4.068 7 N -0.355 5.355 8 C 0.021 3.979 9 C -0.509 4.509 10 H 0.110 0.890 11 C -0.188 4.188 12 N -0.402 5.402 13 Si 0.815 3.185 14 H -0.181 1.181 15 H -0.194 1.194 16 H -0.181 1.181 17 S -0.095 6.095 18 H 0.100 0.900 19 H 0.096 0.904 20 H 0.073 0.927 21 H 0.229 0.771 22 H 0.134 0.866 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.995 3.262 -0.931 6.888 hybrid contribution 0.432 -0.357 0.324 0.648 sum -5.563 2.905 -0.607 6.305 Atomic orbital electron populations 1.22451 0.94077 1.02847 1.03767 1.21965 0.94487 0.95593 0.81936 0.86170 1.86443 1.78235 1.29993 1.43718 1.25402 1.00402 0.92957 1.04025 1.22605 0.89449 0.94638 1.00104 1.70878 1.30379 0.96816 1.37464 1.24045 0.84127 0.96761 0.92983 1.19376 0.93711 0.89356 1.48481 0.89026 1.26881 0.95377 1.04354 0.92217 1.70078 1.01934 1.36753 1.31440 0.85062 0.77717 0.75458 0.80235 1.18051 1.19430 1.18085 1.85820 1.22953 1.06660 1.94018 0.90011 0.90391 0.92713 0.77110 0.86551 0.92707 0.92485 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.46 9.38 71.98 0.68 -3.79 15 2 C 0.12 3.89 3.21 30.59 0.10 3.99 15 3 H 0.12 3.36 8.14 -2.38 -0.02 3.34 15 4 O -0.58 -22.10 12.77 -148.98 -1.90 -24.01 15 5 C -0.10 -3.66 3.26 30.80 0.10 -3.56 15 6 C 0.07 3.06 7.01 86.95 0.61 3.67 15 7 N -0.63 -35.50 8.97 -346.56 -3.11 -38.61 15 8 C 0.29 16.23 7.15 85.87 0.61 16.84 15 9 C -0.47 -25.52 9.46 23.53 0.22 -25.29 15 10 H 0.09 4.70 7.85 -2.91 -0.02 4.67 15 11 C 0.03 1.77 5.50 85.33 0.47 2.24 15 12 N -0.78 -43.24 11.88 21.85 0.26 -42.98 15 13 Si 1.00 38.49 29.56 68.60 2.03 40.52 15 14 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 15 H -0.27 -9.95 7.11 99.48 0.71 -9.25 15 16 H -0.26 -9.50 7.11 99.48 0.71 -8.80 15 17 S -0.32 -14.50 20.23 -56.49 -1.14 -15.64 15 18 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 19 H 0.08 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.05 1.56 7.26 -2.38 -0.02 1.54 15 21 H 0.38 14.74 7.67 -74.06 -0.57 14.18 15 22 H 0.12 3.91 8.14 -2.39 -0.02 3.89 15 23 H 0.05 2.43 8.14 -2.38 -0.02 2.41 15 24 H 0.06 2.66 7.42 -2.39 -0.02 2.64 15 25 H 0.28 14.21 8.29 -92.70 -0.77 13.44 15 Total: -1.00 -63.42 228.90 -0.45 -63.87 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.63 Total: 22.75 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 2.79 Total: -5.91 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -2.85 Total: -81.59 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.90 Total: -24.01 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Atomic # 16 Polarization: -14.50 SS G_CDS: -1.14 Total: -15.64 kcal Total: -63.42 -0.45 -63.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725579261.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.488 kcal (2) G-P(sol) polarization free energy of solvation -63.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds