Wall clock time and date at job start Mon Mar 30 2020 02:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.52526 * 2 1 4 4 O 1.43073 * 109.52404 * 239.86751 * 2 1 3 5 5 C 1.43073 * 113.59561 * 182.14558 * 4 2 1 6 6 C 1.53140 * 109.15281 * 57.95084 * 5 4 2 7 7 O 1.43078 * 109.15041 * 304.69727 * 6 5 4 8 8 C 1.43087 * 113.65499 * 57.91044 * 7 6 5 9 9 H 1.08993 * 109.58347 * 182.22047 * 8 7 6 10 10 C 1.50698 * 109.47119 * 62.01845 * 8 7 6 11 11 O 1.21441 * 119.99760 * 340.93347 * 10 8 7 12 12 C 1.41019 * 119.99899 * 160.93917 * 10 8 7 13 13 H 1.08000 * 120.00208 * 359.97438 * 12 10 8 14 14 C 1.40464 * 119.99942 * 179.97438 * 12 10 8 15 15 N 1.30516 * 119.99884 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99952 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47376 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47158 * 120.00283 * 16 14 12 19 19 H 1.48507 * 109.46912 * 239.99891 * 16 14 12 20 20 H 1.09003 * 109.47108 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46949 * 60.00243 * 1 2 3 22 22 H 1.08999 * 109.47420 * 299.99981 * 1 2 3 23 23 H 1.08997 * 109.52863 * 177.85495 * 5 4 2 24 24 H 1.09007 * 109.52348 * 297.99094 * 5 4 2 25 25 H 1.09006 * 109.52085 * 64.59227 * 6 5 4 26 26 H 1.08999 * 109.53188 * 184.72079 * 6 5 4 27 27 H 0.97007 * 120.00096 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 8 2.0081 -0.6769 -1.1662 5 6 3.4344 -0.7705 -1.2297 6 6 3.9463 -1.4964 0.0178 7 8 3.4680 -0.8196 1.1841 8 6 2.0417 -0.7246 1.2483 9 1 1.7526 -0.1656 2.1382 10 6 1.4482 -2.1085 1.3063 11 8 2.1057 -3.0664 0.9527 12 6 0.1294 -2.2912 1.7711 13 1 -0.4551 -1.4394 2.0858 14 6 -0.4240 -3.5812 1.8246 15 7 0.2822 -4.6105 1.4438 16 14 -2.1707 -3.8233 2.4409 17 1 -2.7523 -2.5077 2.8099 18 1 -2.9913 -4.4453 1.3710 19 1 -2.1568 -4.7095 3.6325 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5138 0.8900 23 1 3.7236 -1.3285 -2.1203 24 1 3.8636 0.2306 -1.2716 25 1 3.5810 -2.5235 0.0172 26 1 5.0363 -1.4975 0.0172 27 1 -0.0998 -5.5014 1.4811 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885173984.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:52 Heat of formation + Delta-G solvation = -150.205395 kcal Electronic energy + Delta-G solvation = -13759.261120 eV Core-core repulsion = 11288.702000 eV Total energy + Delta-G solvation = -2470.559120 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25903 -38.19671 -36.76576 -34.68628 -34.02377 -29.88844 -29.14393 -27.32663 -24.06458 -23.23119 -20.82693 -18.56251 -17.74133 -17.53728 -17.16526 -16.59995 -15.97328 -15.89232 -14.89672 -14.41397 -14.21517 -13.53718 -13.32967 -13.06526 -12.91195 -12.78446 -12.72895 -12.54851 -12.01725 -11.91387 -11.66896 -11.28317 -10.94949 -10.21958 -9.10069 -8.14077 -7.01971 1.34821 1.39992 1.57198 2.16672 2.22243 2.83488 2.96146 3.41657 3.87299 4.07829 4.18480 4.23493 4.33385 4.48813 4.55570 4.66505 4.86662 5.00417 5.06666 5.22032 5.27098 5.55800 6.00925 6.15292 6.24197 6.75231 6.82707 8.29396 8.53356 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.049335 B = 0.013309 C = 0.011886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.417870 B = 2103.317357 C = 2355.131591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 H 0.079 0.921 4 O -0.399 6.399 5 C 0.033 3.967 6 C -0.005 4.005 7 O -0.393 6.393 8 C 0.010 3.990 9 H 0.122 0.878 10 C 0.333 3.667 11 O -0.577 6.577 12 C -0.545 4.545 13 H 0.096 0.904 14 C 0.026 3.974 15 N -0.790 5.790 16 Si 0.988 3.012 17 H -0.240 1.240 18 H -0.268 1.268 19 H -0.269 1.269 20 H 0.062 0.938 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.112 0.888 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.198 7.900 -1.793 8.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.018 3.982 3 H 0.097 0.903 4 O -0.319 6.319 5 C -0.044 4.044 6 C -0.081 4.081 7 O -0.313 6.313 8 C -0.048 4.048 9 H 0.139 0.861 10 C 0.231 3.769 11 O -0.469 6.469 12 C -0.576 4.576 13 H 0.114 0.886 14 C -0.193 4.193 15 N -0.419 5.419 16 Si 0.807 3.193 17 H -0.163 1.163 18 H -0.193 1.193 19 H -0.194 1.194 20 H 0.081 0.919 21 H 0.089 0.911 22 H 0.109 0.891 23 H 0.130 0.870 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.129 0.871 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.819 7.311 -2.001 7.624 hybrid contribution -0.339 -0.405 0.296 0.605 sum -1.157 6.907 -1.705 7.208 Atomic orbital electron populations 1.21955 0.91301 1.04060 1.02962 1.22586 0.97175 0.94324 0.84100 0.90287 1.88029 1.21916 1.79392 1.42569 1.23250 0.81211 1.00889 0.99002 1.23686 0.99959 0.99063 0.85388 1.87866 1.20953 1.78067 1.44403 1.23466 0.81437 0.99713 1.00227 0.86051 1.20549 0.89174 0.88006 0.79128 1.90213 1.63342 1.43797 1.49596 1.21306 1.00341 0.94732 1.41191 0.88609 1.27222 1.04220 0.95135 0.92733 1.70103 1.38907 1.00369 1.32501 0.85101 0.75637 0.80179 0.78342 1.16262 1.19320 1.19401 0.91889 0.91060 0.89109 0.87045 0.91016 0.90998 0.87094 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 8.34 71.98 0.60 -4.67 15 2 C 0.08 3.01 3.15 30.64 0.10 3.10 15 3 H 0.08 2.66 8.14 -2.39 -0.02 2.64 15 4 O -0.40 -17.31 10.23 -136.00 -1.39 -18.70 15 5 C 0.03 1.21 7.05 72.03 0.51 1.72 15 6 C 0.00 -0.21 6.61 72.03 0.48 0.27 15 7 O -0.39 -18.45 10.59 -123.23 -1.30 -19.76 15 8 C 0.01 0.47 3.27 29.90 0.10 0.57 15 9 H 0.12 5.05 8.14 -2.39 -0.02 5.03 15 10 C 0.33 18.84 5.48 26.37 0.14 18.99 15 11 O -0.58 -37.35 12.05 14.74 0.18 -37.17 15 12 C -0.54 -29.20 6.85 23.49 0.16 -29.04 15 13 H 0.10 4.52 7.01 -2.91 -0.02 4.50 15 14 C 0.03 1.37 5.50 85.43 0.47 1.84 15 15 N -0.79 -46.44 11.72 21.91 0.26 -46.18 15 16 Si 0.99 38.75 29.56 68.60 2.03 40.78 15 17 H -0.24 -8.56 7.11 99.48 0.71 -7.86 15 18 H -0.27 -10.22 7.11 99.48 0.71 -9.51 15 19 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 20 H 0.06 2.76 5.61 -2.39 -0.01 2.74 15 21 H 0.07 2.20 8.14 -2.39 -0.02 2.19 15 22 H 0.09 2.77 7.99 -2.39 -0.02 2.75 15 23 H 0.11 3.55 8.14 -2.39 -0.02 3.53 15 24 H 0.07 2.20 8.14 -2.38 -0.02 2.18 15 25 H 0.07 3.80 5.08 -2.38 -0.01 3.79 15 26 H 0.11 3.88 8.14 -2.39 -0.02 3.86 15 27 H 0.28 14.75 8.29 -92.70 -0.77 13.98 15 Total: -1.00 -71.46 224.56 3.49 -67.97 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 1.17 Total: 20.28 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 2.55 Total: -7.22 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.26 Total: -46.18 kcal Atomic # 8 Polarization: -73.11 SS G_CDS: -2.52 Total: -75.63 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -71.46 3.49 -67.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885173984.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.239 kcal (2) G-P(sol) polarization free energy of solvation -71.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds