Wall clock time and date at job start Mon Mar 30 2020 02:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.57567 * 2 1 4 4 O 1.43070 * 109.52641 * 239.83909 * 2 1 3 5 5 C 1.43071 * 113.59345 * 182.14772 * 4 2 1 6 6 C 1.53139 * 109.15343 * 57.94615 * 5 4 2 7 7 O 1.43070 * 109.15411 * 304.69233 * 6 5 4 8 8 C 1.43081 * 113.59423 * 57.94751 * 7 6 5 9 9 H 1.09001 * 109.57679 * 61.98116 * 8 7 6 10 10 C 1.50695 * 109.52450 * 182.14779 * 8 7 6 11 11 O 1.21436 * 120.00215 * 19.67488 * 10 8 7 12 12 C 1.41028 * 119.99592 * 199.67558 * 10 8 7 13 13 H 1.07999 * 120.00350 * 352.20974 * 12 10 8 14 14 C 1.40466 * 119.99911 * 172.22082 * 12 10 8 15 15 N 1.30515 * 120.00250 * 164.51911 * 14 12 10 16 16 Si 1.86797 * 119.99752 * 344.51359 * 14 12 10 17 17 H 1.48500 * 109.47059 * 90.00614 * 16 14 12 18 18 H 1.48497 * 109.47424 * 210.00130 * 16 14 12 19 19 H 1.48501 * 109.47566 * 330.00384 * 16 14 12 20 20 H 1.08994 * 109.47363 * 299.83699 * 1 2 3 21 21 H 1.09005 * 109.46866 * 59.84078 * 1 2 3 22 22 H 1.09002 * 109.46594 * 179.83304 * 1 2 3 23 23 H 1.09005 * 109.52928 * 177.85197 * 5 4 2 24 24 H 1.09002 * 109.52253 * 297.98230 * 5 4 2 25 25 H 1.09001 * 109.52296 * 64.59281 * 6 5 4 26 26 H 1.08996 * 109.52724 * 184.78611 * 6 5 4 27 27 H 0.97004 * 120.00245 * 3.29414 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 8 2.0083 -0.6775 -1.1659 5 6 3.4345 -0.7711 -1.2292 6 6 3.9463 -1.4963 0.0188 7 8 3.4681 -0.8188 1.1846 8 6 2.0418 -0.7252 1.2480 9 1 1.6116 -1.7258 1.2898 10 6 1.6419 0.0469 2.4788 11 8 2.4465 0.7707 3.0296 12 6 0.3332 -0.0710 2.9908 13 1 -0.4177 -0.6123 2.4344 14 6 0.0062 0.5157 4.2245 15 7 -1.2450 0.6748 4.5602 16 14 1.3621 1.0680 5.3846 17 1 1.7208 2.4787 5.0906 18 1 0.8877 0.9600 6.7876 19 1 2.5557 0.2045 5.1978 20 1 -0.3634 0.5113 0.8914 21 1 -0.3633 0.5163 -0.8886 22 1 -0.3632 -1.0277 -0.0030 23 1 3.7239 -1.3296 -2.1194 24 1 3.8637 0.2300 -1.2717 25 1 3.5811 -2.5233 0.0188 26 1 5.0363 -1.4963 0.0188 27 1 -1.9487 0.3449 3.9798 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885306096.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:00 Heat of formation + Delta-G solvation = -148.960868 kcal Electronic energy + Delta-G solvation = -13480.348830 eV Core-core repulsion = 11009.843677 eV Total energy + Delta-G solvation = -2470.505153 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.67374 -37.09010 -35.47627 -33.17336 -32.53625 -28.69100 -27.42026 -25.62100 -22.89051 -21.15053 -19.42913 -17.71953 -16.49290 -15.73098 -15.66590 -14.99152 -14.83020 -13.93256 -13.53591 -13.07535 -12.87303 -12.64463 -11.96323 -11.77207 -11.59733 -11.28391 -10.86738 -10.65360 -10.21862 -10.13475 -9.88112 -9.42693 -9.04837 -8.62926 -7.82002 -7.08775 -5.27248 3.31754 3.57125 3.84367 3.96185 4.04046 4.28035 4.40319 4.91234 5.15567 5.28761 5.35028 5.54220 5.57305 5.72586 5.78049 5.91964 6.15082 6.24967 6.32481 6.43874 6.78807 7.38305 7.48160 7.54845 7.74048 8.26145 8.52235 9.81219 10.00411 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.050963 B = 0.012732 C = 0.010727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.287637 B = 2198.715345 C = 2609.567312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.065 0.935 4 O -0.385 6.385 5 C 0.026 3.974 6 C 0.019 3.981 7 O -0.357 6.357 8 C 0.030 3.970 9 H 0.069 0.931 10 C 0.366 3.634 11 O -0.566 6.566 12 C -0.580 4.580 13 H 0.082 0.918 14 C 0.062 3.938 15 N -0.798 5.798 16 Si 1.119 2.881 17 H -0.283 1.283 18 H -0.318 1.318 19 H -0.274 1.274 20 H 0.102 0.898 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.096 0.904 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -3.226 -8.131 9.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.083 0.917 4 O -0.304 6.304 5 C -0.051 4.051 6 C -0.058 4.058 7 O -0.275 6.275 8 C -0.029 4.029 9 H 0.087 0.913 10 C 0.267 3.733 11 O -0.462 6.462 12 C -0.611 4.611 13 H 0.100 0.900 14 C -0.161 4.161 15 N -0.424 5.424 16 Si 0.949 3.051 17 H -0.210 1.210 18 H -0.249 1.249 19 H -0.200 1.200 20 H 0.120 0.880 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.114 0.886 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.598 -2.205 -6.543 8.295 hybrid contribution -0.474 -1.070 -1.946 2.271 sum 4.124 -3.276 -8.489 9.990 Atomic orbital electron populations 1.21987 0.91907 1.02902 1.03664 1.22552 0.96281 0.95452 0.84340 0.91704 1.88021 1.20188 1.78968 1.43272 1.23165 0.82513 1.00699 0.98726 1.23180 0.99973 0.95847 0.86827 1.88267 1.21104 1.77676 1.40500 1.23405 0.80865 1.00379 0.98297 0.91323 1.19395 0.88642 0.81853 0.83416 1.90004 1.55069 1.41694 1.59477 1.21814 0.97544 1.34699 1.07007 0.89998 1.27515 1.00515 0.90133 0.97887 1.70558 1.00918 1.30737 1.40149 0.82562 0.72975 0.78477 0.71086 1.20992 1.24910 1.20039 0.87960 0.92716 0.92325 0.88560 0.92546 0.92901 0.88475 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.66 37.16 0.32 -2.44 15 2 C 0.07 1.45 2.93 -26.66 -0.08 1.37 15 3 H 0.06 1.38 8.14 -51.93 -0.42 0.96 15 4 O -0.38 -7.12 10.49 -48.80 -0.51 -7.63 15 5 C 0.03 0.40 7.05 37.23 0.26 0.66 15 6 C 0.02 0.32 7.05 37.23 0.26 0.58 15 7 O -0.36 -8.03 10.10 -62.12 -0.63 -8.66 15 8 C 0.03 0.68 2.66 -27.81 -0.07 0.60 15 9 H 0.07 1.52 8.14 -51.93 -0.42 1.10 15 10 C 0.37 9.83 5.75 -33.25 -0.19 9.64 15 11 O -0.57 -16.72 12.49 -13.60 -0.17 -16.89 15 12 C -0.58 -15.51 7.83 -37.69 -0.29 -15.81 15 13 H 0.08 2.09 6.75 -52.49 -0.35 1.74 15 14 C 0.06 1.70 5.52 -17.27 -0.10 1.60 15 15 N -0.80 -21.52 13.64 55.57 0.76 -20.77 15 16 Si 1.12 28.59 26.30 -169.99 -4.47 24.12 15 17 H -0.28 -7.29 7.11 56.52 0.40 -6.89 15 18 H -0.32 -7.70 7.11 56.52 0.40 -7.29 15 19 H -0.27 -7.31 6.61 56.52 0.37 -6.94 15 20 H 0.10 2.12 5.47 -51.93 -0.28 1.83 15 21 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.10 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.10 1.31 8.14 -51.93 -0.42 0.88 15 27 H 0.28 7.26 8.72 -40.82 -0.36 6.90 15 LS Contribution 227.36 15.07 3.43 3.43 Total: -1.00 -30.59 227.36 -4.68 -35.28 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: -3.20 Total: -5.09 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 0.11 Total: -3.79 kcal Atomic # 7 Polarization: -21.52 SS G_CDS: 0.76 Total: -20.77 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -1.31 Total: -33.17 kcal Atomic # 14 Polarization: 28.59 SS G_CDS: -4.47 Total: 24.12 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.59 -4.68 -35.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885306096.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.685 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds