Wall clock time and date at job start Mon Mar 30 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.48030 * 2 1 4 4 H 1.09001 * 109.47289 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47264 * 299.99995 * 3 2 1 6 6 C 1.50701 * 109.47212 * 59.99910 * 3 2 1 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 3 2 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 3 2 9 9 N 1.31511 * 120.00346 * 0.02562 * 8 6 3 10 10 Si 1.86805 * 119.99914 * 180.02562 * 8 6 3 11 11 H 1.48496 * 109.46873 * 60.00290 * 10 8 6 12 12 H 1.48494 * 109.46914 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47008 * 300.00419 * 10 8 6 14 14 C 1.53092 * 109.47914 * 239.97820 * 2 1 3 15 15 C 1.53182 * 109.15988 * 297.59944 * 14 2 1 16 16 C 1.53173 * 109.04651 * 303.04087 * 15 14 2 17 17 C 1.53084 * 109.16704 * 56.97541 * 16 15 14 18 18 O 1.42903 * 109.41644 * 302.39131 * 17 16 15 19 19 H 1.09002 * 109.47106 * 59.99732 * 1 2 3 20 20 H 1.08994 * 109.47074 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46530 * 300.00363 * 1 2 3 22 22 H 0.96705 * 113.99788 * 60.00095 * 5 3 2 23 23 H 0.96993 * 120.00442 * 179.97438 * 9 8 6 24 24 H 1.08999 * 109.52132 * 57.51776 * 14 2 1 25 25 H 1.09001 * 109.51997 * 177.71049 * 14 2 1 26 26 H 1.08999 * 109.54112 * 183.16117 * 15 14 2 27 27 H 1.09009 * 109.60189 * 62.95093 * 15 14 2 28 28 H 1.08998 * 109.52306 * 297.06456 * 16 15 14 29 29 H 1.09006 * 109.52099 * 176.87812 * 16 15 14 30 30 H 1.08998 * 109.48651 * 182.40747 * 17 16 15 31 31 H 1.09007 * 109.49284 * 62.37941 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 1 3.1303 1.4423 0.0005 5 8 1.5641 2.1162 -1.1668 6 6 1.5381 2.1529 1.2305 7 1 0.9174 1.6281 1.9416 8 6 1.8718 3.4728 1.4489 9 7 2.6280 4.1118 0.5832 10 14 1.2499 4.3533 2.9745 11 1 1.7449 3.6528 4.1866 12 1 1.7450 5.7533 2.9743 13 1 -0.2351 4.3539 2.9748 14 6 2.0406 -0.7221 -1.2497 15 6 1.5762 -2.1814 -1.2120 16 6 2.0769 -2.8321 0.0811 17 6 1.5648 -2.0284 1.2791 18 8 2.0066 -0.6741 1.1665 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 0.6000 2.1545 -1.2329 23 1 2.8625 5.0403 0.7367 24 1 1.6419 -0.2356 -2.1399 25 1 3.1298 -0.6871 -1.2711 26 1 1.9832 -2.7157 -2.0705 27 1 0.4872 -2.2195 -1.2415 28 1 3.1669 -2.8397 0.0867 29 1 1.7043 -3.8546 0.1423 30 1 1.9533 -2.4620 2.2006 31 1 0.4752 -2.0551 1.2960 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885309939.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:28 Heat of formation + Delta-G solvation = -109.080946 kcal Electronic energy + Delta-G solvation = -13927.200044 eV Core-core repulsion = 11594.257309 eV Total energy + Delta-G solvation = -2332.942736 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.33417 -35.57464 -33.09803 -32.02677 -31.26174 -27.60388 -26.59456 -23.95876 -23.10581 -20.61736 -18.47252 -16.90559 -15.78501 -15.40788 -14.55950 -14.37920 -14.25702 -13.60143 -13.17370 -12.79236 -12.21252 -12.05461 -11.78813 -11.55053 -11.09514 -10.83967 -10.73237 -10.63170 -10.48836 -10.34726 -9.99857 -9.78703 -8.95062 -8.66814 -8.42358 -8.00081 -5.90701 -4.04858 3.35748 3.40463 3.43425 4.47687 4.50829 5.16933 5.22790 5.26754 5.40298 5.55386 5.70341 5.83510 5.94667 5.99927 6.10268 6.14472 6.24046 6.29357 6.35623 6.50326 6.62323 6.69639 6.94487 7.03298 7.70832 7.95786 8.15432 8.30840 8.95895 9.38695 9.67669 11.14185 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.050965 B = 0.011581 C = 0.010430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.266749 B = 2417.093649 C = 2684.007453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 C 0.244 3.756 4 H 0.061 0.939 5 O -0.558 6.558 6 C -0.551 4.551 7 H 0.060 0.940 8 C 0.075 3.925 9 N -0.865 5.865 10 Si 0.888 3.112 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.139 4.139 15 C -0.122 4.122 16 C -0.154 4.154 17 C 0.054 3.946 18 O -0.353 6.353 19 H 0.058 0.942 20 H 0.042 0.958 21 H 0.072 0.928 22 H 0.344 0.656 23 H 0.259 0.741 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 -10.514 -1.606 11.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.052 3.948 3 C 0.187 3.813 4 H 0.079 0.921 5 O -0.361 6.361 6 C -0.589 4.589 7 H 0.078 0.922 8 C -0.130 4.130 9 N -0.502 5.502 10 Si 0.716 3.284 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.177 4.177 15 C -0.160 4.160 16 C -0.192 4.192 17 C -0.023 4.023 18 O -0.272 6.272 19 H 0.077 0.923 20 H 0.061 0.939 21 H 0.091 0.909 22 H 0.188 0.812 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.695 -10.182 -1.635 10.659 hybrid contribution -1.049 0.199 0.811 1.341 sum -3.744 -9.983 -0.823 10.694 Atomic orbital electron populations 1.22352 0.97028 1.00245 1.03087 1.22440 0.92836 0.96060 0.83453 1.19208 0.95261 0.82287 0.84585 0.92088 1.86625 1.23798 1.79768 1.45935 1.21567 1.33527 0.96346 1.07411 0.92173 1.25054 0.94425 0.97679 0.95839 1.70063 1.35030 1.10506 1.34620 0.86747 0.79156 0.78583 0.83928 1.20184 1.21383 1.20307 1.22137 1.01392 0.94409 0.99762 1.21636 1.00565 0.96801 0.96985 1.22175 1.01658 0.98872 0.96466 1.22470 0.98263 0.84381 0.97218 1.88105 1.73090 1.22307 1.43695 0.92311 0.93873 0.90919 0.81170 0.93110 0.90901 0.91827 0.92548 0.92128 0.91495 0.92026 0.90004 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 7.38 37.16 0.27 -2.89 16 2 C 0.09 1.92 0.59 -90.57 -0.05 1.87 16 3 C 0.24 6.31 2.38 -27.88 -0.07 6.24 16 4 H 0.06 1.78 8.14 -51.93 -0.42 1.36 16 5 O -0.56 -14.26 12.07 -35.23 -0.43 -14.68 16 6 C -0.55 -15.36 7.70 -34.44 -0.27 -15.63 16 7 H 0.06 1.67 6.67 -52.49 -0.35 1.32 16 8 C 0.07 2.14 5.40 -17.82 -0.10 2.04 16 9 N -0.87 -26.03 12.84 55.43 0.71 -25.32 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C -0.14 -2.54 4.74 -26.59 -0.13 -2.67 16 15 C -0.12 -1.81 5.71 -26.55 -0.15 -1.96 16 16 C -0.15 -2.19 6.14 -26.60 -0.16 -2.35 16 17 C 0.05 0.88 6.51 37.20 0.24 1.13 16 18 O -0.35 -7.60 9.83 -35.23 -0.35 -7.94 16 19 H 0.06 1.02 6.78 -51.93 -0.35 0.67 16 20 H 0.04 0.70 4.98 -51.93 -0.26 0.44 16 21 H 0.07 1.48 6.62 -51.93 -0.34 1.13 16 22 H 0.34 7.78 7.33 45.56 0.33 8.11 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.07 1.32 7.76 -51.93 -0.40 0.91 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.85 6.63 -51.92 -0.34 0.51 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.04 0.69 6.34 -51.92 -0.33 0.36 16 LS Contribution 242.40 15.07 3.65 3.65 Total: -1.00 -30.79 242.40 -5.55 -36.34 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.72 Total: 5.46 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -0.41 Total: -14.21 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.71 Total: -25.32 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.77 Total: -22.63 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.79 -5.55 -36.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885309939.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.740 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds