Wall clock time and date at job start Mon Mar 30 2020 03:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.49039 * 2 1 4 4 H 1.09003 * 109.46588 * 299.97470 * 3 2 1 5 5 O 1.42897 * 109.47071 * 179.97438 * 3 2 1 6 6 C 1.50697 * 109.46892 * 59.97173 * 3 2 1 7 7 H 1.08004 * 120.00228 * 359.97438 * 6 3 2 8 8 C 1.37877 * 119.99853 * 180.02562 * 6 3 2 9 9 N 1.31506 * 120.00218 * 0.02562 * 8 6 3 10 10 Si 1.86800 * 119.99726 * 179.97438 * 8 6 3 11 11 H 1.48495 * 109.47554 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47121 * 120.00388 * 10 8 6 13 13 H 1.48508 * 109.47232 * 239.99996 * 10 8 6 14 14 C 1.53096 * 109.48087 * 239.97457 * 2 1 3 15 15 C 1.53181 * 109.16280 * 297.62164 * 14 2 1 16 16 C 1.53176 * 109.03564 * 303.02405 * 15 14 2 17 17 C 1.53090 * 109.16668 * 56.97896 * 16 15 14 18 18 O 1.42902 * 109.41282 * 302.38812 * 17 16 15 19 19 H 1.09006 * 109.47282 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47449 * 300.02881 * 1 2 3 21 21 H 1.08995 * 109.47359 * 60.03102 * 1 2 3 22 22 H 0.96700 * 113.99939 * 299.99563 * 5 3 2 23 23 H 0.97001 * 120.00163 * 180.02562 * 9 8 6 24 24 H 1.08998 * 109.52300 * 57.53116 * 14 2 1 25 25 H 1.09004 * 109.51858 * 177.71843 * 14 2 1 26 26 H 1.09005 * 109.54183 * 62.88808 * 15 14 2 27 27 H 1.08991 * 109.54342 * 183.15360 * 15 14 2 28 28 H 1.09005 * 109.52173 * 297.06763 * 16 15 14 29 29 H 1.09001 * 109.52406 * 176.88450 * 16 15 14 30 30 H 1.09003 * 109.47962 * 182.41257 * 17 16 15 31 31 H 1.08998 * 109.49361 * 62.37633 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 1 1.6776 1.9561 -0.8903 5 8 3.4694 1.4419 0.0006 6 6 1.5377 2.1531 1.2301 7 1 0.9160 1.6286 1.9406 8 6 1.8707 3.4732 1.4480 9 7 2.6266 4.1122 0.5821 10 14 1.2470 4.3543 2.9724 11 1 0.4219 3.4212 3.7809 12 1 2.4015 4.8214 3.7814 13 1 0.4222 5.5210 2.5673 14 6 2.0405 -0.7222 -1.2496 15 6 1.5757 -2.1813 -1.2122 16 6 2.0765 -2.8322 0.0808 17 6 1.5645 -2.0285 1.2790 18 8 2.0066 -0.6742 1.1664 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5143 0.8897 21 1 -0.3634 0.5133 -0.8902 22 1 3.8622 1.0002 0.7659 23 1 2.8611 5.0409 0.7356 24 1 1.6420 -0.2357 -2.1399 25 1 3.1298 -0.6873 -1.2710 26 1 0.4867 -2.2180 -1.2409 27 1 1.9825 -2.7157 -2.0707 28 1 3.1665 -2.8400 0.0863 29 1 1.7037 -3.8547 0.1420 30 1 1.9532 -2.4622 2.2004 31 1 0.4750 -2.0550 1.2960 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885309942.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:38 Heat of formation + Delta-G solvation = -111.133475 kcal Electronic energy + Delta-G solvation = -13951.487510 eV Core-core repulsion = 11618.455770 eV Total energy + Delta-G solvation = -2333.031740 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.31407 -35.24478 -33.07454 -32.02106 -31.58758 -27.74445 -26.19617 -23.89672 -23.04503 -20.72801 -18.56111 -16.87018 -15.69286 -15.38292 -14.54547 -14.34454 -14.13847 -13.56703 -13.19721 -12.66133 -12.18693 -12.09965 -11.75787 -11.61345 -11.04445 -10.88546 -10.65323 -10.63586 -10.47796 -10.39714 -9.98411 -9.71631 -8.90937 -8.64583 -8.46428 -7.91334 -5.90529 -4.04380 3.33222 3.41373 3.45800 4.48032 4.53960 5.17932 5.23046 5.28141 5.38962 5.56287 5.72200 5.85862 5.95215 5.99898 6.11099 6.17531 6.25403 6.31942 6.45660 6.54386 6.56760 6.74819 6.95538 7.10977 7.65263 7.95483 8.12772 8.35918 8.96875 9.50452 9.69540 11.14287 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.052898 B = 0.011431 C = 0.010662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.196647 B = 2448.810552 C = 2625.486674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.090 3.910 3 C 0.247 3.753 4 H 0.064 0.936 5 O -0.564 6.564 6 C -0.550 4.550 7 H 0.061 0.939 8 C 0.074 3.926 9 N -0.866 5.866 10 Si 0.887 3.113 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 C -0.140 4.140 15 C -0.122 4.122 16 C -0.153 4.153 17 C 0.055 3.945 18 O -0.357 6.357 19 H 0.041 0.959 20 H 0.072 0.928 21 H 0.056 0.944 22 H 0.352 0.648 23 H 0.258 0.742 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.855 -10.787 -1.203 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 C 0.189 3.811 4 H 0.081 0.919 5 O -0.367 6.367 6 C -0.589 4.589 7 H 0.079 0.921 8 C -0.131 4.131 9 N -0.503 5.503 10 Si 0.715 3.285 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.178 4.178 15 C -0.160 4.160 16 C -0.191 4.191 17 C -0.023 4.023 18 O -0.275 6.275 19 H 0.060 0.940 20 H 0.091 0.909 21 H 0.076 0.924 22 H 0.196 0.804 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.750 -10.193 -1.694 10.693 hybrid contribution -0.517 0.038 1.130 1.243 sum -3.267 -10.155 -0.564 10.683 Atomic orbital electron populations 1.22295 0.96729 0.99999 1.03260 1.22541 0.92917 0.96047 0.83397 1.19408 0.79072 0.85067 0.97565 0.91854 1.86460 1.21742 1.81039 1.47436 1.21666 1.33069 0.96121 1.08000 0.92083 1.25049 0.94419 0.97480 0.96108 1.70082 1.35003 1.10312 1.34912 0.86644 0.78672 0.79605 0.83611 1.19752 1.21039 1.21133 1.22126 1.02230 0.94375 0.99036 1.21634 1.00504 0.96832 0.97018 1.22164 1.01664 0.98816 0.96423 1.22454 0.98257 0.84397 0.97162 1.88069 1.73166 1.22385 1.43909 0.93988 0.90893 0.92449 0.80384 0.93250 0.91806 0.90864 0.92199 0.92578 0.91462 0.92094 0.90083 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 7.68 37.15 0.29 -2.86 16 2 C 0.09 1.88 0.53 -90.57 -0.05 1.83 16 3 C 0.25 6.33 2.23 -27.88 -0.06 6.26 16 4 H 0.06 1.76 8.14 -51.93 -0.42 1.34 16 5 O -0.56 -15.02 12.02 -44.88 -0.54 -15.56 16 6 C -0.55 -15.30 7.70 -34.44 -0.27 -15.56 16 7 H 0.06 1.70 6.66 -52.48 -0.35 1.35 16 8 C 0.07 2.11 5.40 -17.82 -0.10 2.02 16 9 N -0.87 -26.02 12.84 55.43 0.71 -25.31 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C -0.14 -2.54 4.81 -26.59 -0.13 -2.67 16 15 C -0.12 -1.80 5.72 -26.55 -0.15 -1.95 16 16 C -0.15 -2.15 6.14 -26.59 -0.16 -2.32 16 17 C 0.05 0.88 6.52 37.20 0.24 1.12 16 18 O -0.36 -7.42 9.32 -44.88 -0.42 -7.84 16 19 H 0.04 0.68 4.98 -51.93 -0.26 0.43 16 20 H 0.07 1.51 6.62 -51.93 -0.34 1.16 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.35 8.79 8.56 45.56 0.39 9.18 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.07 1.42 7.62 -51.93 -0.40 1.02 16 26 H 0.06 0.84 6.62 -51.93 -0.34 0.50 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.69 6.34 -51.93 -0.33 0.36 16 LS Contribution 244.45 15.07 3.68 3.68 Total: -1.00 -30.45 244.45 -5.69 -36.14 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.72 Total: 6.32 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -0.39 Total: -14.13 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.71 Total: -25.31 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.96 Total: -23.40 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.45 -5.69 -36.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885309942.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.992 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds