Wall clock time and date at job start Mon Mar 30 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.49039 * 2 1 4 4 H 1.09003 * 109.46588 * 299.97470 * 3 2 1 5 5 O 1.42897 * 109.47071 * 179.97438 * 3 2 1 6 6 C 1.50697 * 109.46892 * 59.97173 * 3 2 1 7 7 H 1.08004 * 120.00228 * 359.97438 * 6 3 2 8 8 C 1.37877 * 119.99853 * 180.02562 * 6 3 2 9 9 N 1.31506 * 120.00218 * 0.02562 * 8 6 3 10 10 Si 1.86800 * 119.99726 * 179.97438 * 8 6 3 11 11 H 1.48495 * 109.47554 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47121 * 120.00388 * 10 8 6 13 13 H 1.48508 * 109.47232 * 239.99996 * 10 8 6 14 14 C 1.53096 * 109.48087 * 239.97457 * 2 1 3 15 15 C 1.53181 * 109.16280 * 297.62164 * 14 2 1 16 16 C 1.53176 * 109.03564 * 303.02405 * 15 14 2 17 17 C 1.53090 * 109.16668 * 56.97896 * 16 15 14 18 18 O 1.42902 * 109.41282 * 302.38812 * 17 16 15 19 19 H 1.09006 * 109.47282 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47449 * 300.02881 * 1 2 3 21 21 H 1.08995 * 109.47359 * 60.03102 * 1 2 3 22 22 H 0.96700 * 113.99939 * 299.99563 * 5 3 2 23 23 H 0.97001 * 120.00163 * 180.02562 * 9 8 6 24 24 H 1.08998 * 109.52300 * 57.53116 * 14 2 1 25 25 H 1.09004 * 109.51858 * 177.71843 * 14 2 1 26 26 H 1.09005 * 109.54183 * 62.88808 * 15 14 2 27 27 H 1.08991 * 109.54342 * 183.15360 * 15 14 2 28 28 H 1.09005 * 109.52173 * 297.06763 * 16 15 14 29 29 H 1.09001 * 109.52406 * 176.88450 * 16 15 14 30 30 H 1.09003 * 109.47962 * 182.41257 * 17 16 15 31 31 H 1.08998 * 109.49361 * 62.37633 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 1 1.6776 1.9561 -0.8903 5 8 3.4694 1.4419 0.0006 6 6 1.5377 2.1531 1.2301 7 1 0.9160 1.6286 1.9406 8 6 1.8707 3.4732 1.4480 9 7 2.6266 4.1122 0.5821 10 14 1.2470 4.3543 2.9724 11 1 0.4219 3.4212 3.7809 12 1 2.4015 4.8214 3.7814 13 1 0.4222 5.5210 2.5673 14 6 2.0405 -0.7222 -1.2496 15 6 1.5757 -2.1813 -1.2122 16 6 2.0765 -2.8322 0.0808 17 6 1.5645 -2.0285 1.2790 18 8 2.0066 -0.6742 1.1664 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5143 0.8897 21 1 -0.3634 0.5133 -0.8902 22 1 3.8622 1.0002 0.7659 23 1 2.8611 5.0409 0.7356 24 1 1.6420 -0.2357 -2.1399 25 1 3.1298 -0.6873 -1.2710 26 1 0.4867 -2.2180 -1.2409 27 1 1.9825 -2.7157 -2.0707 28 1 3.1665 -2.8400 0.0863 29 1 1.7037 -3.8547 0.1420 30 1 1.9532 -2.4622 2.2004 31 1 0.4750 -2.0550 1.2960 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885309942.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:37 Heat of formation + Delta-G solvation = -132.910132 kcal Electronic energy + Delta-G solvation = -13952.431817 eV Core-core repulsion = 11618.455770 eV Total energy + Delta-G solvation = -2333.976047 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.82120 -37.17942 -34.45024 -34.19995 -33.17156 -29.27860 -28.12321 -25.49077 -24.58380 -22.35034 -19.98531 -18.96259 -17.38512 -16.91311 -16.60375 -15.79537 -15.61812 -15.24760 -14.74724 -14.51155 -13.80729 -13.57004 -13.42137 -13.12202 -12.82784 -12.70674 -12.56069 -12.07981 -12.01579 -11.90626 -11.72218 -11.14407 -10.85638 -10.67773 -10.14070 -9.84177 -8.08053 -6.28794 1.39110 1.40879 1.53029 2.42380 3.04427 3.23424 3.96290 4.01317 4.02501 4.11152 4.28769 4.44397 4.54178 4.61599 4.74227 4.79602 4.92874 5.04393 5.07160 5.12538 5.21346 5.33977 5.35960 5.55049 5.70697 5.76864 6.15216 6.68922 6.79473 7.38446 7.55613 8.96966 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.052898 B = 0.011431 C = 0.010662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.196647 B = 2448.810552 C = 2625.486674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 C 0.240 3.760 4 H 0.032 0.968 5 O -0.578 6.578 6 C -0.556 4.556 7 H 0.058 0.942 8 C 0.019 3.981 9 N -0.906 5.906 10 Si 0.955 3.045 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.279 1.279 14 C -0.137 4.137 15 C -0.117 4.117 16 C -0.148 4.148 17 C 0.045 3.955 18 O -0.388 6.388 19 H 0.074 0.926 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.356 0.644 23 H 0.259 0.741 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.830 -12.564 -0.652 13.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 C 0.183 3.817 4 H 0.049 0.951 5 O -0.382 6.382 6 C -0.594 4.594 7 H 0.076 0.924 8 C -0.182 4.182 9 N -0.545 5.545 10 Si 0.781 3.219 11 H -0.190 1.190 12 H -0.208 1.208 13 H -0.204 1.204 14 C -0.175 4.175 15 C -0.154 4.154 16 C -0.185 4.185 17 C -0.032 4.032 18 O -0.307 6.307 19 H 0.093 0.907 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.201 0.799 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.738 -11.990 -1.139 12.611 hybrid contribution -0.194 0.549 0.955 1.119 sum -3.932 -11.441 -0.184 12.099 Atomic orbital electron populations 1.22227 0.95406 1.01803 1.02294 1.22155 0.93719 0.93472 0.84898 1.19315 0.78566 0.88459 0.95408 0.95071 1.86409 1.22577 1.81511 1.47680 1.21941 1.32540 0.96435 1.08446 0.92376 1.25885 0.94676 0.98431 0.99169 1.70215 1.36630 1.10663 1.36966 0.85571 0.78127 0.78434 0.79795 1.18975 1.20822 1.20440 1.22053 1.01003 0.96986 0.97493 1.21628 1.01311 0.94076 0.98398 1.22141 1.01374 1.00140 0.94861 1.22772 0.99024 0.82282 0.99080 1.87992 1.73842 1.25083 1.43814 0.90713 0.93000 0.92268 0.79935 0.93238 0.92013 0.92718 0.90939 0.90396 0.92064 0.88626 0.88420 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.89 7.68 71.98 0.55 -5.34 16 2 C 0.10 4.00 0.53 -10.76 -0.01 4.00 16 3 C 0.24 12.64 2.23 29.85 0.07 12.70 16 4 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 5 O -0.58 -31.76 12.02 -139.75 -1.68 -33.44 16 6 C -0.56 -31.36 7.70 25.60 0.20 -31.16 16 7 H 0.06 3.25 6.66 -2.91 -0.02 3.23 16 8 C 0.02 1.11 5.40 84.66 0.46 1.57 16 9 N -0.91 -55.65 12.84 21.45 0.28 -55.38 16 10 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 14 C -0.14 -4.86 4.81 30.69 0.15 -4.72 16 15 C -0.12 -3.04 5.72 30.71 0.18 -2.87 16 16 C -0.15 -3.62 6.14 30.68 0.19 -3.43 16 17 C 0.04 1.31 6.52 72.01 0.47 1.78 16 18 O -0.39 -15.77 9.32 -139.75 -1.30 -17.07 16 19 H 0.07 2.23 4.98 -2.38 -0.01 2.22 16 20 H 0.05 2.11 6.62 -2.39 -0.02 2.09 16 21 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.36 18.35 8.56 -74.06 -0.63 17.72 16 23 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.05 2.11 7.62 -2.38 -0.02 2.09 16 26 H 0.07 1.73 6.62 -2.38 -0.02 1.71 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.05 1.47 6.34 -2.39 -0.02 1.46 16 Total: -1.00 -65.90 244.45 2.05 -63.84 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.48 Total: 22.50 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 2.25 Total: -27.46 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.28 Total: -55.38 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -2.98 Total: -50.51 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -65.90 2.05 -63.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885309942.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.067 kcal (2) G-P(sol) polarization free energy of solvation -65.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds