Wall clock time and date at job start Mon Mar 30 2020 02:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 112.99764 * 2 1 4 4 C 1.50702 * 109.47095 * 65.38479 * 3 2 1 5 5 O 1.21212 * 120.00335 * 5.33921 * 4 3 2 6 6 O 1.34310 * 119.99752 * 185.34049 * 4 3 2 7 7 C 1.34924 * 117.00177 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99682 * 359.97438 * 7 6 4 9 9 C 1.38750 * 120.00558 * 180.02562 * 7 6 4 10 10 N 1.31432 * 120.00169 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99682 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47272 * 89.99695 * 11 9 7 13 13 H 1.48497 * 109.46993 * 210.00001 * 11 9 7 14 14 H 1.48507 * 109.47046 * 329.99807 * 11 9 7 15 15 C 1.54032 * 113.82019 * 228.00894 * 2 1 3 16 16 O 1.44172 * 85.52060 * 268.35615 * 15 2 1 17 17 C 1.44178 * 93.33978 * 335.80523 * 16 15 2 18 18 H 1.08995 * 109.47150 * 283.07089 * 1 2 3 19 19 H 1.08990 * 109.47094 * 43.07547 * 1 2 3 20 20 H 1.09000 * 109.46632 * 163.07471 * 1 2 3 21 21 H 1.09000 * 109.47183 * 185.38548 * 3 2 1 22 22 H 1.09003 * 109.46898 * 305.38342 * 3 2 1 23 23 H 0.97006 * 119.99852 * 179.97438 * 10 9 7 24 24 H 1.09004 * 113.86180 * 22.50348 * 15 2 1 25 25 H 1.08998 * 113.86233 * 154.19914 * 15 2 1 26 26 H 1.09004 * 113.86775 * 270.05117 * 17 16 15 27 27 H 1.08995 * 113.98748 * 138.35552 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 6 1.7793 2.1020 1.2917 5 8 1.2023 1.4960 2.1686 6 8 2.1080 3.3919 1.4712 7 6 1.7666 3.9527 2.6499 8 1 1.2520 3.3672 3.3976 9 6 2.0755 5.2818 2.9012 10 7 1.7424 5.8282 4.0493 11 14 2.9635 6.2950 1.6073 12 1 1.9674 6.9520 0.7234 13 1 3.7936 7.3307 2.2734 14 1 3.8357 5.4077 0.7965 15 6 2.1521 -0.9427 -1.0473 16 8 2.1443 -1.9305 0.0028 17 6 2.1520 -0.9397 1.0502 18 1 -0.3633 0.2324 1.0010 19 1 -0.3633 0.7506 -0.7018 20 1 -0.3632 -0.9832 -0.2992 21 1 3.2115 1.3432 -0.0965 22 1 1.7219 1.9753 -0.8379 23 1 1.9588 6.7574 4.2251 24 1 1.4877 -1.1778 -1.8788 25 1 3.1512 -0.6476 -1.3680 26 1 3.1512 -0.6437 1.3700 27 1 1.4884 -1.1706 1.8834 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924111075.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:07 Heat of formation + Delta-G solvation = -96.799152 kcal Electronic energy + Delta-G solvation = -13027.236902 eV Core-core repulsion = 10558.993651 eV Total energy + Delta-G solvation = -2468.243252 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.67429 -38.93748 -35.48584 -32.82610 -32.29633 -28.27882 -26.42185 -25.95744 -24.83429 -20.29434 -18.56145 -17.94101 -16.84950 -15.89700 -15.68887 -15.36426 -14.98453 -14.59620 -13.70001 -13.33991 -12.80615 -12.45383 -12.18608 -12.02413 -11.71964 -11.37668 -11.03063 -10.59840 -10.47972 -10.34401 -10.24818 -9.70846 -9.50572 -9.08215 -8.68677 -6.37368 -4.13103 3.13243 3.22816 3.34095 3.40709 3.83080 3.96219 4.23730 4.61033 4.89979 5.06402 5.14294 5.25856 5.43168 5.61328 5.79653 5.84237 5.99062 6.05643 6.14320 6.23713 6.30806 6.46948 6.54934 7.74453 8.03442 8.62386 9.01459 9.69064 10.71305 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.066298 B = 0.008805 C = 0.008340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.235663 B = 3179.380428 C = 3356.389295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.110 4.110 3 C -0.102 4.102 4 C 0.410 3.590 5 O -0.535 6.535 6 O -0.255 6.255 7 C -0.381 4.381 8 H 0.109 0.891 9 C 0.065 3.935 10 N -0.876 5.876 11 Si 0.905 3.095 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.261 1.261 15 C 0.042 3.958 16 O -0.387 6.387 17 C 0.055 3.945 18 H 0.079 0.921 19 H 0.057 0.943 20 H 0.058 0.942 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.279 0.721 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 -8.017 -10.548 13.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.110 4.110 3 C -0.140 4.140 4 C 0.256 3.744 5 O -0.430 6.430 6 O -0.164 6.164 7 C -0.457 4.457 8 H 0.127 0.873 9 C -0.139 4.139 10 N -0.516 5.516 11 Si 0.730 3.270 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.185 1.185 15 C -0.035 4.035 16 O -0.306 6.306 17 C -0.022 4.022 18 H 0.098 0.902 19 H 0.076 0.924 20 H 0.077 0.923 21 H 0.113 0.887 22 H 0.114 0.886 23 H 0.089 0.911 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.391 -8.254 -10.180 13.179 hybrid contribution 0.400 0.900 -0.371 1.052 sum 1.791 -7.354 -10.551 12.985 Atomic orbital electron populations 1.21606 0.91684 1.01386 1.03908 1.23413 0.98074 0.93631 0.95902 1.21279 1.02456 0.94761 0.95468 1.22864 0.80439 0.81847 0.89263 1.90570 1.41550 1.66136 1.44764 1.83525 1.69094 1.24504 1.39244 1.20640 1.38561 0.95714 0.90793 0.87333 1.24547 0.96648 0.95840 0.96815 1.69606 1.45336 1.14257 1.22354 0.86223 0.80050 0.79551 0.81128 1.19907 1.20788 1.18487 1.24092 1.00193 0.86927 0.92315 1.89619 1.95744 1.28001 1.17236 1.24027 1.00493 0.85405 0.92226 0.90200 0.92420 0.92339 0.88742 0.88649 0.91076 0.89259 0.90260 0.90401 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.75 37.16 0.33 -1.54 15 2 C -0.11 -1.60 0.78 -153.43 -0.12 -1.72 15 3 C -0.10 -1.61 5.26 -27.88 -0.15 -1.76 15 4 C 0.41 9.22 7.56 36.01 0.27 9.49 15 5 O -0.54 -13.28 13.04 -19.05 -0.25 -13.53 15 6 O -0.25 -6.63 8.58 -20.71 -0.18 -6.80 15 7 C -0.38 -11.26 10.10 30.92 0.31 -10.94 15 8 H 0.11 3.53 7.09 -52.48 -0.37 3.15 15 9 C 0.06 1.86 5.49 -17.53 -0.10 1.76 15 10 N -0.88 -25.95 13.96 55.48 0.77 -25.18 15 11 Si 0.90 21.31 28.62 -169.99 -4.86 16.44 15 12 H -0.27 -6.28 7.11 56.52 0.40 -5.87 15 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 14 H -0.26 -5.99 7.11 56.52 0.40 -5.59 15 15 C 0.04 0.50 8.28 37.61 0.31 0.82 15 16 O -0.39 -5.89 12.40 -35.23 -0.44 -6.32 15 17 C 0.05 0.85 7.18 37.61 0.27 1.12 15 18 H 0.08 1.37 6.88 -51.93 -0.36 1.01 15 19 H 0.06 0.76 8.11 -51.93 -0.42 0.34 15 20 H 0.06 0.76 8.01 -51.93 -0.42 0.34 15 21 H 0.09 1.31 8.08 -51.93 -0.42 0.89 15 22 H 0.10 1.32 8.14 -51.93 -0.42 0.90 15 23 H 0.28 7.55 8.31 -40.82 -0.34 7.21 15 24 H 0.09 0.91 8.10 -51.93 -0.42 0.49 15 25 H 0.08 0.82 8.06 -51.93 -0.42 0.40 15 26 H 0.08 1.18 8.10 -51.93 -0.42 0.76 15 27 H 0.10 1.60 8.10 -51.93 -0.42 1.18 15 LS Contribution 238.29 15.07 3.59 3.59 Total: -1.00 -31.94 238.29 -3.46 -35.39 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -3.22 Total: -0.81 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 1.13 Total: -2.78 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.77 Total: -25.18 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.86 Total: -26.65 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.86 Total: 16.44 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.94 -3.46 -35.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924111075.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.406 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds