Wall clock time and date at job start Mon Mar 30 2020 02:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 112.99764 * 2 1 4 4 C 1.50702 * 109.47095 * 65.38479 * 3 2 1 5 5 O 1.21212 * 120.00335 * 5.33921 * 4 3 2 6 6 O 1.34310 * 119.99752 * 185.34049 * 4 3 2 7 7 C 1.34924 * 117.00177 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99682 * 359.97438 * 7 6 4 9 9 C 1.38750 * 120.00558 * 180.02562 * 7 6 4 10 10 N 1.31432 * 120.00169 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99682 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47272 * 89.99695 * 11 9 7 13 13 H 1.48497 * 109.46993 * 210.00001 * 11 9 7 14 14 H 1.48507 * 109.47046 * 329.99807 * 11 9 7 15 15 C 1.54032 * 113.82019 * 228.00894 * 2 1 3 16 16 O 1.44172 * 85.52060 * 268.35615 * 15 2 1 17 17 C 1.44178 * 93.33978 * 335.80523 * 16 15 2 18 18 H 1.08995 * 109.47150 * 283.07089 * 1 2 3 19 19 H 1.08990 * 109.47094 * 43.07547 * 1 2 3 20 20 H 1.09000 * 109.46632 * 163.07471 * 1 2 3 21 21 H 1.09000 * 109.47183 * 185.38548 * 3 2 1 22 22 H 1.09003 * 109.46898 * 305.38342 * 3 2 1 23 23 H 0.97006 * 119.99852 * 179.97438 * 10 9 7 24 24 H 1.09004 * 113.86180 * 22.50348 * 15 2 1 25 25 H 1.08998 * 113.86233 * 154.19914 * 15 2 1 26 26 H 1.09004 * 113.86775 * 270.05117 * 17 16 15 27 27 H 1.08995 * 113.98748 * 138.35552 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 6 1.7793 2.1020 1.2917 5 8 1.2023 1.4960 2.1686 6 8 2.1080 3.3919 1.4712 7 6 1.7666 3.9527 2.6499 8 1 1.2520 3.3672 3.3976 9 6 2.0755 5.2818 2.9012 10 7 1.7424 5.8282 4.0493 11 14 2.9635 6.2950 1.6073 12 1 1.9674 6.9520 0.7234 13 1 3.7936 7.3307 2.2734 14 1 3.8357 5.4077 0.7965 15 6 2.1521 -0.9427 -1.0473 16 8 2.1443 -1.9305 0.0028 17 6 2.1520 -0.9397 1.0502 18 1 -0.3633 0.2324 1.0010 19 1 -0.3633 0.7506 -0.7018 20 1 -0.3632 -0.9832 -0.2992 21 1 3.2115 1.3432 -0.0965 22 1 1.7219 1.9753 -0.8379 23 1 1.9588 6.7574 4.2251 24 1 1.4877 -1.1778 -1.8788 25 1 3.1512 -0.6476 -1.3680 26 1 3.1512 -0.6437 1.3700 27 1 1.4884 -1.1706 1.8834 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924111075.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:06 Heat of formation + Delta-G solvation = -119.464912 kcal Electronic energy + Delta-G solvation = -13028.219763 eV Core-core repulsion = 10558.993651 eV Total energy + Delta-G solvation = -2469.226113 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93710 -40.72548 -37.40664 -34.49130 -34.11732 -29.70888 -27.52461 -27.47723 -26.49481 -22.07577 -20.18005 -19.65078 -18.61775 -17.16751 -17.09185 -16.76513 -16.59013 -16.25018 -15.47977 -14.66798 -14.41178 -14.21236 -13.80362 -13.32545 -13.17681 -12.81569 -12.44049 -12.31483 -12.15359 -11.89159 -11.74120 -11.41526 -10.92149 -10.81529 -10.58865 -8.52925 -6.39450 1.32876 1.35203 1.55007 1.62194 2.27994 2.40990 2.75091 2.93471 3.35676 3.69670 3.91379 4.18392 4.41708 4.50918 4.60695 4.63979 4.69294 4.88332 4.93058 4.99530 5.15255 5.23483 5.34204 5.53792 5.92109 6.59875 6.86037 7.64496 8.60320 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.066298 B = 0.008805 C = 0.008340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.235663 B = 3179.380428 C = 3356.389295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.116 4.116 3 C -0.091 4.091 4 C 0.408 3.592 5 O -0.565 6.565 6 O -0.264 6.264 7 C -0.406 4.406 8 H 0.055 0.945 9 C 0.012 3.988 10 N -0.922 5.922 11 Si 0.985 3.015 12 H -0.260 1.260 13 H -0.269 1.269 14 H -0.247 1.247 15 C 0.056 3.944 16 O -0.403 6.403 17 C 0.047 3.953 18 H 0.041 0.959 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.126 0.874 22 H 0.128 0.872 23 H 0.288 0.712 24 H 0.116 0.884 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.889 -7.845 -13.819 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.116 4.116 3 C -0.129 4.129 4 C 0.255 3.745 5 O -0.460 6.460 6 O -0.173 6.173 7 C -0.482 4.482 8 H 0.073 0.927 9 C -0.187 4.187 10 N -0.562 5.562 11 Si 0.805 3.195 12 H -0.185 1.185 13 H -0.194 1.194 14 H -0.171 1.171 15 C -0.020 4.020 16 O -0.322 6.322 17 C -0.030 4.030 18 H 0.060 0.940 19 H 0.091 0.909 20 H 0.092 0.908 21 H 0.144 0.856 22 H 0.146 0.854 23 H 0.098 0.902 24 H 0.134 0.866 25 H 0.125 0.875 26 H 0.099 0.901 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.727 -8.113 -13.446 15.939 hybrid contribution -0.103 0.684 0.696 0.981 sum 2.624 -7.429 -12.750 14.988 Atomic orbital electron populations 1.21578 0.92077 1.02753 1.02055 1.23518 0.97936 0.93083 0.97058 1.21515 1.04654 0.94705 0.92003 1.24456 0.78254 0.80682 0.91078 1.90576 1.42356 1.66430 1.46607 1.83541 1.70116 1.26299 1.37389 1.20289 1.39989 0.96335 0.91575 0.92663 1.25607 0.97028 0.96667 0.99432 1.69716 1.46569 1.15237 1.24697 0.85043 0.78953 0.77660 0.77837 1.18474 1.19370 1.17067 1.24320 1.01937 0.84193 0.91510 1.89611 1.95879 1.28785 1.17943 1.23978 1.00328 0.86367 0.92282 0.93983 0.90891 0.90819 0.85630 0.85432 0.90229 0.86629 0.87529 0.90145 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 8.75 71.98 0.63 -2.89 15 2 C -0.12 -3.08 0.78 -51.48 -0.04 -3.12 15 3 C -0.09 -2.60 5.26 29.85 0.16 -2.44 15 4 C 0.41 18.21 7.56 71.24 0.54 18.75 15 5 O -0.56 -29.03 13.04 20.77 0.27 -28.76 15 6 O -0.26 -13.66 8.58 14.84 0.13 -13.53 15 7 C -0.41 -24.79 10.10 67.94 0.69 -24.10 15 8 H 0.06 3.86 7.09 -2.91 -0.02 3.84 15 9 C 0.01 0.69 5.49 84.88 0.47 1.15 15 10 N -0.92 -55.99 13.96 21.62 0.30 -55.69 15 11 Si 0.99 43.07 28.62 68.60 1.96 45.03 15 12 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 13 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 14 H -0.25 -10.19 7.11 99.48 0.71 -9.48 15 15 C 0.06 1.11 8.28 72.27 0.60 1.71 15 16 O -0.40 -11.28 12.40 -148.98 -1.85 -13.13 15 17 C 0.05 1.43 7.18 72.27 0.52 1.95 15 18 H 0.04 1.47 6.88 -2.39 -0.02 1.45 15 19 H 0.07 1.76 8.11 -2.39 -0.02 1.74 15 20 H 0.07 1.77 8.01 -2.39 -0.02 1.75 15 21 H 0.13 2.89 8.08 -2.39 -0.02 2.87 15 22 H 0.13 2.91 8.14 -2.39 -0.02 2.89 15 23 H 0.29 15.77 8.31 -92.70 -0.77 15.00 15 24 H 0.12 1.72 8.10 -2.38 -0.02 1.71 15 25 H 0.11 1.58 8.06 -2.39 -0.02 1.56 15 26 H 0.08 2.36 8.10 -2.38 -0.02 2.34 15 27 H 0.08 2.57 8.10 -2.39 -0.02 2.55 15 Total: -1.00 -72.79 238.29 5.53 -67.26 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.16 Total: 7.82 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 3.56 Total: -9.00 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.30 Total: -55.69 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -1.45 Total: -55.43 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.96 Total: 45.03 kcal Total: -72.79 5.53 -67.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924111075.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.207 kcal (2) G-P(sol) polarization free energy of solvation -72.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds